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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

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BioLiP
>protein
HLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLGVSSRCPICKMPLPT

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2m1s:A 99 49 0.9592 0.4747 0.9592 3.94e-23 7ckl:B, 7ela:B, 5i72:A, 5i72:B
2 7x6v:B 48 48 0.6327 0.6458 0.6458 8.26e-17
3 7ckm:B 49 47 0.4898 0.4898 0.5106 1.31e-10 7el9:B, 7el9:E, 7elb:B, 7elb:D, 7elc:B, 7vgq:B, 7vh1:B
4 6f98:A 78 25 0.2245 0.1410 0.4400 0.56
5 2csy:A 81 35 0.2449 0.1481 0.3429 0.99
6 2ff0:A 102 47 0.3061 0.1471 0.3191 1.1 2a66:A, 5l0m:A, 8pki:K
7 6wi7:A 206 45 0.2857 0.0680 0.3111 1.8 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
8 6zu5:SDD 59 28 0.2041 0.1695 0.3571 1.9
9 7r70:A 150 21 0.1633 0.0533 0.3810 2.6 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
10 7dvq:M 191 32 0.2041 0.0524 0.3125 2.6 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
11 4xgc:C 567 33 0.2653 0.0229 0.3939 2.7
12 1chc:A 68 25 0.1837 0.1324 0.3600 2.9
13 6ff4:t 172 32 0.2041 0.0581 0.3125 3.6 8ch6:Z, 6ff7:t, 7qtt:Z
14 7jgs:C 614 33 0.2653 0.0212 0.3939 3.8 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C
15 1cyg:A 680 22 0.1837 0.0132 0.4091 5.3
16 7u2s:A 248 27 0.2041 0.0403 0.3704 5.6 7u2s:B
17 6l8n:A 810 37 0.2449 0.0148 0.3243 7.0
18 6ct6:B 331 25 0.2041 0.0302 0.4000 8.4 6ct6:A
19 2djb:A 72 41 0.2449 0.1667 0.2927 9.2
20 1iym:A 55 26 0.1633 0.1455 0.3077 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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