Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNK

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7m5w:A 138 73 0.9865 0.5290 1.0000 2.00e-52 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
2 1gt0:D 79 70 0.3784 0.3544 0.4000 1.73e-13 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
3 4y60:C 76 70 0.3649 0.3553 0.3857 2.77e-13
4 2lef:A 86 69 0.3378 0.2907 0.3623 3.38e-13
5 6l6y:D 80 70 0.3784 0.3500 0.4000 3.80e-13 4a3n:A, 3f27:D, 6l6y:F
6 4s2q:D 76 71 0.3514 0.3421 0.3662 1.30e-11 4euw:A
7 6t78:A 77 71 0.3649 0.3506 0.3803 2.97e-11 6t78:B, 3u2b:C
8 1j5n:A 93 50 0.2703 0.2151 0.4000 2.32e-07
9 2gzk:A 159 70 0.2973 0.1384 0.3143 1.06e-06 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
10 2gzk:A 159 49 0.2297 0.1069 0.3469 7.77e-04 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
11 6cik:N 90 38 0.2027 0.1667 0.3947 6.31e-04 6cg0:N, 6cim:N
12 6cij:N 133 38 0.1892 0.1053 0.3684 0.003 5zdz:N, 5ze1:N, 5ze2:N
13 5jh0:D 157 49 0.2162 0.1019 0.3265 0.005 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
14 5jh0:D 157 49 0.1892 0.0892 0.2857 0.011 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
15 1e7j:A 74 63 0.2297 0.2297 0.2698 0.030 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
16 4fir:A 333 43 0.2027 0.0450 0.3488 0.24 4fir:B, 4fir:C, 4fir:D, 4fir:E, 4fir:F
17 4qr9:A 75 55 0.2162 0.2133 0.2909 0.25 4qr9:B
18 2efe:A 246 19 0.1216 0.0366 0.4737 2.8 2efe:C, 4g01:A
19 6hb4:A 197 51 0.1351 0.0508 0.1961 3.5 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
20 4mgu:A 379 20 0.1351 0.0264 0.5000 6.9
21 3lv8:A 204 26 0.0946 0.0343 0.2692 6.9
22 7p1g:M 347 8 0.0946 0.0202 0.8750 6.9 7p1g:K, 7p1g:L, 7p1g:N, 7p1g:O
23 7zie:B 185 52 0.2432 0.0973 0.3462 7.2 7zie:A
24 4c0w:A 200 40 0.2027 0.0750 0.3750 10.0 4c0x:A, 4c14:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218