Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHSQDPMSGILYINIYPIVNYPETIKVSAIPYYEEFLPGKWKKRIGDLIYLYGYGIENEFDEIDNSNALFGKIFRKYLL
DILSENIATPWQLKELGSTLRLVKEITENYEFSNIIKLQYELIINVHHWQNTNFGIIVDLKINILDRENNQRISYTKIKD
KYGESVKKKIWVSVQAFHRHLTPEGKKYATAMRDKFNLLTGLLKEAFGSSEDEKTFSTPDGEIKIVFKPLEIVEVS

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ok9:C 236 236 1.0000 1.0000 1.0000 1.27e-174 8pvv:C, 8qg0:B
2 7yf2:A 275 66 0.0720 0.0618 0.2576 2.0 8gze:B, 8gze:A, 8gzf:A, 8gzf:B, 7y9c:A, 7y9c:B, 7yf2:B, 7yf3:A, 7yf3:B, 7yf4:A, 7yf4:B
3 6pmi:F 239 129 0.1441 0.1423 0.2636 2.0 6pmj:F
4 5x51:M 1386 119 0.1144 0.0195 0.2269 2.5 5x4z:A, 5x51:A, 8yfr:A
5 5xon:A 1427 119 0.1144 0.0189 0.2269 2.5 6a5l:A, 6a5o:A, 6a5p:A, 6a5r:A, 6a5t:A, 6a5u:A, 8h0v:A, 8h0w:A, 8he5:A, 6inq:A, 6ir9:A, 6j4w:A, 6j4x:A, 6j4y:A, 6j4z:A, 6j50:A, 6j51:A, 8jh2:A, 8jh3:A, 8jh4:A, 7wbv:A, 7wbw:A, 7wbx:A, 5x4z:M, 5x50:A, 7xn7:A, 5xog:A, 7xse:A, 7xsx:A, 7xsz:A, 7xt7:A, 7xtd:A, 7xti:A, 8yfq:A
6 5odc:F 447 87 0.0975 0.0515 0.2644 3.3 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
7 6mo5:A 303 63 0.0763 0.0594 0.2857 4.5 6c9c:A, 6cax:A, 7ci4:A, 7ci4:B, 7ci5:A, 7ci5:B, 7ci5:C, 7ci5:D, 7ci6:A, 7ci6:B, 7ci7:A, 7ci8:A, 7ci8:B, 7ci9:A, 7cia:A, 7cib:A, 7cic:A, 7cic:B, 7cid:A, 7cie:A, 7cie:B, 7del:A, 7dem:A, 7den:A, 5drq:A, 5drr:A, 6dui:A, 8e4a:A, 6e54:A, 4fw3:A, 4fw3:B, 4fw3:C, 4fw3:D, 4fw4:A, 4fw4:B, 4fw4:C, 4fw4:D, 4fw5:A, 4fw5:B, 4fw5:C, 4fw5:D, 4fw6:A, 4fw6:B, 4fw6:C, 4fw6:D, 4fw7:A, 4fw7:B, 4fw7:C, 4fw7:D, 6i46:AAA, 6i47:AAA, 6i48:AAA, 6i49:AAA, 6i49:BBB, 6i4a:AAA, 4j3d:A, 4j3d:B, 7k99:A, 7k99:C, 7k9a:A, 7k9a:C, 4lcf:A, 4lcg:A, 4lch:A, 6mae:A, 6mo4:A, 6mod:A, 6moo:A, 5n8c:A, 5n8c:B, 4okg:A, 4okg:B, 3p3e:A, 7phn:A, 7pj2:A, 7pjg:A, 7pk8:A, 7pkk:A, 7pkm:A, 7pzs:A, 7pzu:A, 7pzv:A, 7pzw:A, 7pzx:A, 7q01:A, 3u1y:A, 3u1y:B, 5u39:A, 5u3b:A, 5u3b:B, 3uhm:A, 5upg:A, 2ves:A, 2ves:B, 2ves:C, 5vwm:A
8 5vh2:A 209 137 0.1441 0.1627 0.2482 8.4 5vh2:B, 5vh2:C, 5vh2:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218