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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHHHHHKLNLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEAC
GLLLGSSCGHWDIFSTWNISLPSVPKPPPKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNS
QKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVWQQSRQDQLRALTTITDLVRKFLGPVPVYPAVG
NHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFCSRENFWLLINST
DPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLA
VAFLAPSATTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLV
YRMRDDEQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARADSPALCRHLM

The query sequence (length=534) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fib:B 534 534 1.0000 1.0000 1.0000 0.0 5fi9:B, 5fi9:A, 5fib:A, 5fic:A, 5fic:C, 5fic:B, 5fic:D, 5hqn:B, 5hqn:A
2 5jg8:B 530 526 0.8708 0.8774 0.8840 0.0 5i81:A, 5i85:A, 5i8r:A, 5i8r:B, 5i8r:C, 5jg8:A
3 5kar:A 412 435 0.2491 0.3228 0.3057 7.67e-52 5kas:A
4 5ebe:A 418 439 0.2584 0.3301 0.3144 1.58e-51 5ebb:A, 5ebb:B, 5ebb:C, 5ebe:B, 5ebe:C
5 5fc1:A 426 447 0.2603 0.3263 0.3110 6.40e-51 5fc5:A, 5fc6:A, 5fc7:A, 5fca:A, 5fca:B, 5fcb:A, 8w6p:A, 8w6p:B, 8w6r:A
6 3c9f:B 540 103 0.0431 0.0426 0.2233 0.80 3c9f:A
7 1war:A 310 141 0.0730 0.1258 0.2766 0.91 2bq8:X
8 7nac:n 425 61 0.0356 0.0447 0.3115 2.2 7btb:n, 6c0f:n, 6cb1:n, 6elz:n, 6em1:n, 6em3:n, 6em4:n, 6em5:n, 6ft6:n, 3jct:n, 6m62:n, 7ohq:n, 7ohr:n, 7ohs:n, 7ohv:n, 7ohw:n, 7r6q:n, 7r7a:n, 7u0h:n, 7uoo:n, 7uqb:n, 7uqz:n, 7v08:n, 8v83:n, 8v84:n, 8v87:n, 6ylx:n, 6yly:n, 5z3g:M
9 4w1y:B 433 173 0.0824 0.1016 0.2543 2.4
10 8hio:D 152 124 0.0581 0.2039 0.2500 6.9
11 6thk:A 466 100 0.0449 0.0515 0.2400 7.9
12 2nxf:A 314 77 0.0356 0.0605 0.2468 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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