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BioLiP
>protein
HGYIKEPVSRAYMGALEKQTMGWTAAAQKYGSVIDNPQSVEGPKGFPAAGPPDGRIASANGGSGQIDFGLDKQTADHWVK
QNIRGGFNTFTWHYTAPHATSKWHYYITKKNWNPNKPLSRDEFELIGTVNHDGSKADTNLTHKIFVPTDRSGYHIILGVW
DVADTSNAFYNVIDVNLT

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5iju:A 178 178 1.0000 1.0000 1.0000 2.96e-133 5iju:B, 2yox:A, 2yox:B, 2yoy:A, 2yoy:B
2 6twe:A 172 178 0.5787 0.5988 0.5787 7.11e-67
3 5wsz:A 169 179 0.5225 0.5503 0.5196 8.31e-56 5wsz:B, 5wsz:C, 5wsz:D
4 8rry:A 170 180 0.4944 0.5176 0.4889 3.28e-55 8rry:B
5 5l2v:A 166 177 0.4888 0.5241 0.4915 7.41e-53 5l2v:B
6 8cc3:A 180 182 0.4607 0.4556 0.4505 5.94e-44 8cc3:B, 8cc5:A, 8cc5:B, 7pb6:A, 7pb6:B, 7pb7:A, 7pb7:B
7 8gul:B 361 149 0.4270 0.2105 0.5101 2.77e-43
8 8gul:A 464 149 0.4270 0.1638 0.5101 1.58e-42
9 6t5z:A 174 181 0.4326 0.4425 0.4254 5.34e-42 6t5z:B, 6t5z:C
10 5ftz:A 172 180 0.4213 0.4360 0.4167 5.93e-36
11 4alc:A 166 177 0.4045 0.4337 0.4068 8.70e-36 4ale:A, 4alq:A, 4alr:A, 4als:A, 4alt:A
12 5fjq:A 180 188 0.3427 0.3389 0.3245 1.33e-16 5fjq:B, 5fjq:C
13 5aa7:A 142 176 0.2978 0.3732 0.3011 2.30e-16 5aa7:B, 5vg0:A, 5vg0:B, 5vg1:A, 5vg1:B
14 7zjb:B 181 128 0.2472 0.2431 0.3438 1.97e-13
15 6if7:A 183 190 0.2809 0.2732 0.2632 1.65e-12
16 7okr:AAA 192 127 0.1966 0.1823 0.2756 1.41e-07
17 4oy7:A 196 204 0.3146 0.2857 0.2745 5.61e-07 4oy7:B, 4oy7:C, 4oy7:D, 4oy7:E, 4oy7:F, 4oy7:G, 4oy7:H
18 5uiz:A 186 134 0.2135 0.2043 0.2836 2.21e-05
19 5opf:A 194 200 0.2753 0.2526 0.2450 0.002
20 4oy6:A 186 193 0.2360 0.2258 0.2176 1.1 4oy8:A
21 6hpf:A 312 79 0.1124 0.0641 0.2532 1.9
22 2gbw:A 449 64 0.0955 0.0379 0.2656 3.4 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
23 1gpz:A 368 50 0.0843 0.0408 0.3000 4.5 1gpz:B
24 6gw4:A 307 86 0.1236 0.0717 0.2558 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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