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BioLiP
>protein
HFEIGSIVGILITFINGPTEVYGQFLDGSPPLVWDKKDVPENKRTFKSKPRLLDIVLALYSDGCFYRAQIIDEFPSEYMI
FYVDYGNTEFVPLSCLAPCENVDSFKPHRVFSFHIEGIVRSKNLTHQKTIECIEYLKSKLLNTEMNVHLVQRLPDGFLIR
FLDDWKYIPEQLLQRNYAQVS

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cfd:F 182 181 1.0000 0.9945 1.0000 1.11e-135 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
2 3omc:A 217 54 0.1160 0.0968 0.3889 8.98e-05 5m9o:A, 3omc:B, 3omg:A, 3omg:B
3 5m9n:A 202 116 0.1823 0.1634 0.2845 0.005 5m9n:B
4 5vqh:A 213 115 0.1602 0.1362 0.2522 0.014 5vqh:B
5 5ygf:A 215 52 0.0939 0.0791 0.3269 0.022 5ygd:A
6 5yj8:A 60 49 0.1105 0.3333 0.4082 0.93 8jtn:A, 2lto:A, 6v9t:AAA, 6v9t:BBB
7 6tug:B 415 82 0.1547 0.0675 0.3415 1.6 6tug:A, 6tug:C, 6tug:D, 6tug:E, 6tug:F, 6tug:G, 6tug:H
8 6go1:A 318 28 0.0608 0.0346 0.3929 5.2 6go1:B
9 5ijw:B 276 25 0.0552 0.0362 0.4000 6.1 5ijw:A
10 5hj7:B 260 25 0.0552 0.0385 0.4000 6.4 5hj7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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