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BioLiP
>protein
HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLH
PDSGN

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8vfy:O 102 85 1.0000 0.8333 1.0000 2.65e-61 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
2 7yze:A 87 82 0.8941 0.8736 0.9268 1.84e-55 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
3 6ako:C 97 83 0.7176 0.6289 0.7349 4.73e-42 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
4 2hdc:A 97 82 0.6353 0.5567 0.6585 1.18e-35
5 7cby:C 100 83 0.6235 0.5300 0.6386 2.00e-35
6 7vov:A 93 79 0.5412 0.4946 0.5823 9.08e-32 7vou:C, 7vov:B
7 7yza:A 122 81 0.5059 0.3525 0.5309 8.65e-28 7yz7:A, 7yzc:A, 7yzd:A
8 2c6y:A 98 82 0.5412 0.4694 0.5610 1.47e-27 2c6y:B
9 8bzm:E 95 82 0.5176 0.4632 0.5366 2.66e-26 8bzm:I, 8bzm:A, 8bzm:J
10 7yzb:A 125 80 0.4235 0.2880 0.4500 9.60e-24
11 7yzg:A 121 80 0.4235 0.2975 0.4500 9.61e-23
12 6ncm:A 91 81 0.4353 0.4066 0.4568 4.04e-22 6nce:A, 6ncm:B
13 3g73:B 95 83 0.4471 0.4000 0.4578 3.84e-21 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
14 2a07:J 83 78 0.3765 0.3855 0.4103 1.71e-20 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
15 3qrf:G 82 77 0.3882 0.4024 0.4286 2.95e-20 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
16 7tdw:A 90 77 0.3882 0.3667 0.4286 4.48e-20 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
17 2uzk:A 97 83 0.4118 0.3608 0.4217 4.15e-18 2uzk:C
18 6el8:A 89 79 0.4000 0.3820 0.4304 8.00e-18 6el8:D
19 3co6:C 91 83 0.4000 0.3736 0.4096 2.20e-17 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
20 3l2c:A 85 79 0.3882 0.3882 0.4177 4.06e-16
21 6uri:N 164 68 0.2353 0.1220 0.2941 1.1
22 4en2:B 149 68 0.2353 0.1342 0.2941 1.2 6cri:Y, 6cri:Z, 4emz:C, 4emz:B
23 7z8f:e 4579 46 0.1647 0.0031 0.3043 1.5 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
24 8ptk:f 4502 46 0.1647 0.0031 0.3043 1.6 8ptk:e
25 4tlm:D 753 42 0.1529 0.0173 0.3095 1.7
26 4tll:D 757 42 0.1529 0.0172 0.3095 1.8 4tll:B, 4tlm:B, 5un1:B
27 5iov:B 798 42 0.1529 0.0163 0.3095 2.2 5iou:B, 5iou:D, 5iov:D, 5un1:D, 5un1:H
28 7eor:A 745 45 0.1647 0.0188 0.3111 2.6 7eor:C, 7yfi:B
29 7eoq:A 783 45 0.1647 0.0179 0.3111 2.9 7eoq:C, 7eou:A, 7eou:C, 7eu7:B, 7eu7:D, 5tpw:B, 5tq2:B
30 4pe5:D 727 42 0.1647 0.0193 0.3333 4.9 4pe5:B
31 9are:B 789 42 0.1647 0.0177 0.3333 5.5 9are:D, 9arf:B, 9arf:D, 9ari:B, 9ari:D, 9bib:B, 9bib:D, 6e7r:B, 6e7r:D, 6e7s:B, 6e7s:D, 6e7t:B, 6e7t:D, 6e7u:B, 6e7u:D, 6e7v:B, 6e7v:D, 6e7w:B, 6e7w:D, 6e7x:B, 6e7x:D, 5ewj:B, 5ewj:D, 5ewl:B, 5ewl:D, 5ewm:B, 5ewm:D, 8g18:B, 8g18:D, 3jpy:A, 3qel:B, 3qel:D, 3qem:B, 3qem:D, 7saa:B, 7saa:D, 7sac:B, 7sac:D, 6whu:B, 6whu:D, 6whv:B, 6whv:D, 6whw:B, 6whw:D, 6whx:B, 6whx:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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