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BioLiP
>protein
HAFRFHHIGVQTSDLENSLGWYREFFGCEQNWSLEKFSDLTRSRLPGITRLVELAAGDLRIHVFERAPAPVAEVPQFQHL
CLATRSPEEMTEWRDRWLELYESGRYTFVRDEGPTDIVVDEDGVLSLYVLDVNGLEYEFTYLPEGV

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6on3:B 148 148 0.9863 0.9730 0.9730 1.67e-103 6on1:A, 6on1:B, 6on1:C, 6on1:D, 6on1:E, 6on1:F, 6on3:A, 6on3:C, 6on3:D, 6on3:F, 6on3:E
2 3sk2:A 132 119 0.1712 0.1894 0.2101 1.2 3sk2:B
3 4rlr:A 126 45 0.0822 0.0952 0.2667 1.2
4 8c6j:J 367 78 0.1438 0.0572 0.2692 1.7 8ch6:O, 7dh6:B, 7dh6:C, 7dh6:D, 6ff4:D, 9fmd:T, 8i0p:T, 8i0r:T, 8i0t:T, 8i0w:T, 6id0:T, 6id1:T, 6qdv:J, 8ro2:T, 5xjc:T, 5yzg:T, 5z56:T, 5z57:T, 5z58:T, 6zym:D
5 4k6f:B 245 76 0.1575 0.0939 0.3026 1.9 4k6f:C, 4k6f:D
6 4g56:A 617 48 0.1096 0.0259 0.3333 2.9 4g56:C
7 2xkl:A 149 56 0.1301 0.1275 0.3393 4.8
8 6qh4:C 138 26 0.0479 0.0507 0.2692 5.4 6qh4:A, 6qh4:B, 6qh4:D, 3rmu:A, 3rmu:B, 3rmu:C, 3rmu:D
9 7aoi:XA 154 44 0.1233 0.1169 0.4091 6.7 6yxx:EG, 6yxy:EG
10 5okz:Q 207 42 0.0822 0.0580 0.2857 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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