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BioLiP
>protein
GYDEEKVNRIQGDLQTVDISGVSQILKAIADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK
EGKLALYSLGDEHIRQIMMIALAHKKE

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1u2w:B 107 107 1.0000 1.0000 1.0000 1.42e-75 1u2w:A, 1u2w:C
2 1u2w:D 94 107 0.8692 0.9894 0.8692 7.38e-61
3 1r23:A 104 62 0.2430 0.2500 0.4194 1.51e-09 1r22:A, 1r22:B, 1r23:B
4 6cdb:A 97 93 0.2617 0.2887 0.3011 7.37e-08 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
5 2jsc:B 97 81 0.2430 0.2680 0.3210 3.25e-05 2jsc:A
6 6o8m:A 95 78 0.2430 0.2737 0.3333 8.55e-05
7 4omy:A 97 74 0.2056 0.2268 0.2973 1.42e-04 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
8 4i2o:A 198 51 0.1495 0.0808 0.3137 0.43 4i2o:B
9 5xvn:B 288 44 0.1495 0.0556 0.3636 0.47 5xvn:A, 5xvn:C, 5xvn:I, 5xvn:J, 5xvn:K, 5xvn:L, 5xvo:A, 5xvo:B, 5xvo:C, 5xvo:I, 5xvo:J, 5xvo:K, 5xvo:L, 5xvo:D, 5xvp:A, 5xvp:B, 5xvp:C, 5xvp:D
10 6qwi:A 448 73 0.1869 0.0446 0.2740 0.49 1bgg:B, 1bgg:C, 1bgg:D, 1e4i:A, 6qwi:B, 6r4k:A, 6r4k:B, 1uyq:A
11 5xvn:D 259 44 0.1495 0.0618 0.3636 0.57
12 8pw0:A 137 46 0.1495 0.1168 0.3478 0.65
13 5knk:B 324 89 0.2336 0.0772 0.2809 0.85
14 7b0c:A 144 49 0.1589 0.1181 0.3469 1.6 7b0c:B, 5n07:A
15 7t2r:D 447 27 0.1308 0.0313 0.5185 2.4 7t2r:I, 7t30:D, 7t30:I
16 7vjq:A 120 51 0.1495 0.1333 0.3137 3.0 7vjq:B, 8w35:A, 8w35:B
17 4v6w:AJ 181 56 0.1402 0.0829 0.2679 6.3 6xu6:AJ, 6xu7:AJ, 6xu8:AJ
18 5mmi:U 96 44 0.1215 0.1354 0.2955 7.0 6eri:AT, 5h1s:V, 5mlc:V, 5mmm:U, 4v61:BV, 5x8p:U, 5x8t:U
19 6xn1:B 333 53 0.1495 0.0480 0.3019 7.1 6xn1:A, 6xn2:B, 6xn2:A
20 2nz2:A 402 24 0.0935 0.0249 0.4167 7.5
21 8ebb:A 169 22 0.1028 0.0651 0.5000 8.4
22 7lhv:A 575 65 0.1963 0.0365 0.3231 8.4 7lhv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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