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BioLiP
>protein
GWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWLGRAKKIGDGGWNQFQFLFFDPNGYLYAVSKDKLYKAPPPQSD
TDNWIARATEIGSGG

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kih:B 95 95 1.0000 1.0000 1.0000 2.36e-66 3kih:A, 3kih:C, 3kih:D
2 3kif:I 94 63 0.5895 0.5957 0.8889 9.13e-37 3kif:A, 3kif:B, 3kif:C, 3kif:D, 3kif:E, 3kif:F, 3kif:G, 3kif:J
3 3kif:I 94 79 0.5053 0.5106 0.6076 3.52e-31 3kif:A, 3kif:B, 3kif:C, 3kif:D, 3kif:E, 3kif:F, 3kif:G, 3kif:J
4 8r3b:A 47 47 0.3684 0.7447 0.7447 3.25e-19 8r3c:A, 8r3c:B, 8r3c:E
5 8r3b:A 47 44 0.3158 0.6383 0.6818 7.85e-16 8r3c:A, 8r3c:B, 8r3c:E
6 3dkp:A 240 69 0.2000 0.0792 0.2754 0.091
7 5ugr:A 323 63 0.2000 0.0588 0.3016 4.8
8 5zbl:D 181 50 0.1579 0.0829 0.3000 5.1 5zbl:C
9 1sn0:A 118 49 0.1474 0.1186 0.2857 7.5 6gnm:D, 6gnm:C, 6gno:A, 6gno:B, 6gnr:A, 6gnr:B, 6gnw:A, 6gnw:C, 6gnw:B, 6gnw:D, 6gon:A, 6gon:C, 6gon:B, 6gon:D, 6goo:A, 6goo:B, 1sn0:B, 1sn0:D, 1sn0:C, 1sn5:C, 1sn5:B, 1sn5:D
10 8g9u:P 757 21 0.0947 0.0119 0.4286 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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