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BioLiP
>protein
GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1exk:A 79 79 1.0000 1.0000 1.0000 1.22e-53
2 2ctt:A 104 78 0.3924 0.2981 0.3974 3.17e-15
3 6jzb:A 251 78 0.4557 0.1434 0.4615 3.68e-14
4 7zhs:A 242 79 0.3544 0.1157 0.3544 6.15e-04 7zhs:C, 7zhs:B, 7zhs:D, 7zhs:E, 7zhs:G, 7zhs:F, 7zhs:H, 7zhs:I, 7zhs:Q, 7zhs:M, 7zhs:U, 7zhs:Y, 7zhs:g, 7zhs:c, 7zhs:k, 7zhs:J, 7zhs:R, 7zhs:N, 7zhs:V, 7zhs:Z, 7zhs:h, 7zhs:d, 7zhs:l, 7zhs:K, 7zhs:S, 7zhs:O, 7zhs:W, 7zhs:a, 7zhs:i, 7zhs:e, 7zhs:m, 7zhs:L, 7zhs:T, 7zhs:P, 7zhs:X, 7zhs:b, 7zhs:j, 7zhs:f, 7zhs:n
5 6h5l:A 506 27 0.1772 0.0277 0.5185 0.025
6 3pmq:A 593 66 0.2532 0.0337 0.3030 0.077
7 3pmq:A 593 38 0.1646 0.0219 0.3421 0.56
8 3lcz:A 53 28 0.1519 0.2264 0.4286 0.14 3lcz:B, 3lcz:C, 3lcz:D, 3ld0:A, 3ld0:B, 3ld0:C, 3ld0:D, 3ld0:E, 3ld0:F, 3ld0:G, 3ld0:H, 3ld0:I, 3ld0:J, 3ld0:K, 3ld0:L, 3ld0:M, 3ld0:N, 3ld0:O, 3ld0:P, 3ld0:Q, 3ld0:R, 3ld0:S, 3ld0:T, 3ld0:U, 3ld0:V, 3ld0:W, 3ld0:X, 3ld0:Y, 3ld0:Z, 3ld0:1, 3ld0:2, 3ld0:3, 3ld0:4, 3ld0:5, 3ld0:6, 3ld0:7, 3ld0:8, 3ld0:9, 3ld0:a, 3ld0:b, 3ld0:c, 3ld0:d, 3ld0:e, 3ld0:f, 3ld0:g, 3ld0:h, 3ld0:i, 3ld0:j, 3ld0:k, 3ld0:l, 3ld0:m
9 3lcz:A 53 34 0.1519 0.2264 0.3529 1.4 3lcz:B, 3lcz:C, 3lcz:D, 3ld0:A, 3ld0:B, 3ld0:C, 3ld0:D, 3ld0:E, 3ld0:F, 3ld0:G, 3ld0:H, 3ld0:I, 3ld0:J, 3ld0:K, 3ld0:L, 3ld0:M, 3ld0:N, 3ld0:O, 3ld0:P, 3ld0:Q, 3ld0:R, 3ld0:S, 3ld0:T, 3ld0:U, 3ld0:V, 3ld0:W, 3ld0:X, 3ld0:Y, 3ld0:Z, 3ld0:1, 3ld0:2, 3ld0:3, 3ld0:4, 3ld0:5, 3ld0:6, 3ld0:7, 3ld0:8, 3ld0:9, 3ld0:a, 3ld0:b, 3ld0:c, 3ld0:d, 3ld0:e, 3ld0:f, 3ld0:g, 3ld0:h, 3ld0:i, 3ld0:j, 3ld0:k, 3ld0:l, 3ld0:m
10 3lcz:A 53 32 0.1646 0.2453 0.4062 1.7 3lcz:B, 3lcz:C, 3lcz:D, 3ld0:A, 3ld0:B, 3ld0:C, 3ld0:D, 3ld0:E, 3ld0:F, 3ld0:G, 3ld0:H, 3ld0:I, 3ld0:J, 3ld0:K, 3ld0:L, 3ld0:M, 3ld0:N, 3ld0:O, 3ld0:P, 3ld0:Q, 3ld0:R, 3ld0:S, 3ld0:T, 3ld0:U, 3ld0:V, 3ld0:W, 3ld0:X, 3ld0:Y, 3ld0:Z, 3ld0:1, 3ld0:2, 3ld0:3, 3ld0:4, 3ld0:5, 3ld0:6, 3ld0:7, 3ld0:8, 3ld0:9, 3ld0:a, 3ld0:b, 3ld0:c, 3ld0:d, 3ld0:e, 3ld0:f, 3ld0:g, 3ld0:h, 3ld0:i, 3ld0:j, 3ld0:k, 3ld0:l, 3ld0:m
11 8ouw:2 701 53 0.2278 0.0257 0.3396 0.22
12 2vf8:B 835 25 0.1266 0.0120 0.4000 0.46 2vf7:A, 2vf7:C
13 2vf8:B 835 29 0.1392 0.0132 0.3793 2.9 2vf7:A, 2vf7:C
14 2vf7:B 813 25 0.1266 0.0123 0.4000 0.48 2vf8:A
15 2vf7:B 813 24 0.1392 0.0135 0.4583 1.0 2vf8:A
16 4me3:A 246 26 0.1139 0.0366 0.3462 0.79
17 7o7g:A 627 38 0.1772 0.0223 0.3684 0.96 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
18 3ux8:A 564 23 0.1266 0.0177 0.4348 1.1
19 6m0q:A 504 16 0.1139 0.0179 0.5625 2.0 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
20 6m0q:A 504 26 0.1266 0.0198 0.3846 7.5 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
21 7ape:A 435 53 0.1519 0.0276 0.2264 2.3 7ape:B
22 5hxd:A 237 30 0.1519 0.0506 0.4000 2.9 5hxd:B
23 8c6e:A 124 27 0.1013 0.0645 0.2963 5.2 3q8i:A
24 2aqc:A 63 37 0.1646 0.2063 0.3514 5.5 2apo:B
25 6rtd:B 466 21 0.1013 0.0172 0.3810 5.7 6rtd:A, 6rte:A, 6rte:B
26 2r6f:A 899 30 0.1266 0.0111 0.3333 7.8
27 3uwx:A 945 30 0.1266 0.0106 0.3333 7.9
28 2r6f:B 879 30 0.1266 0.0114 0.3333 8.2
29 7caf:E 443 53 0.1519 0.0271 0.2264 9.6 8hpl:E, 8hpm:E, 8hpn:E, 8hpr:E
30 1zrt:D 248 20 0.1013 0.0323 0.4000 9.7 6xi0:D, 6xi0:Q, 6xkt:D, 6xkt:Q, 6xku:D, 6xku:Q, 6xkv:D, 6xkv:Q, 6xkw:D, 6xkw:Q, 6xkx:D, 6xkx:Q, 6xkz:D, 6xkz:Q, 1zrt:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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