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BioLiP
>protein
GVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTL
TVEAPMP

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gjh:F 87 87 1.0000 1.0000 1.0000 2.00e-61 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
2 4m5s:A 87 81 0.5402 0.5402 0.5802 7.42e-30 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
3 3l1e:A 105 85 0.5287 0.4381 0.5412 1.56e-29
4 5lum:A 78 73 0.4598 0.5128 0.5479 2.67e-26 5lum:B, 5lum:D, 5lum:C, 5lum:E
5 6f2r:Q 89 83 0.3793 0.3708 0.3976 3.56e-18 6f2r:T, 6f2r:V
6 5vjv:A 298 29 0.1379 0.0403 0.4138 0.73 5vjw:A
7 2jh3:A 459 42 0.1724 0.0327 0.3571 1.2 2jh3:B, 2jh3:C, 2jh3:D
8 7pua:Cg 487 47 0.1839 0.0329 0.3404 1.3 6hiv:Cg, 6hiw:Cg, 6hiz:Cg, 7pub:Cg, 6sg9:Cg, 6sgb:Cg
9 2g28:B 801 82 0.3218 0.0350 0.3415 1.9 2g28:A, 2iea:A, 2iea:B, 1l8a:B, 1l8a:A, 3lpl:A, 3lpl:B, 3lq2:A, 3lq2:B, 3lq4:A, 3lq4:B, 2qta:A, 2qta:B, 2qtc:A, 2qtc:B, 1rp7:A, 1rp7:B
10 2g25:B 831 82 0.3218 0.0337 0.3415 1.9 2g25:A
11 6quz:D 574 42 0.1379 0.0209 0.2857 2.4 6quz:B, 6qv0:B, 6qv0:D, 6qv1:B, 6qv1:D, 6qv2:B, 6qv2:D
12 7ane:ad 694 30 0.1494 0.0187 0.4333 2.4
13 7kya:A 1174 60 0.1724 0.0128 0.2500 2.4 7ky5:A, 7ky7:A, 7ky8:A, 7ky9:A
14 8io8:A 788 36 0.1609 0.0178 0.3889 2.6 8io8:B, 8io9:A, 8io9:B, 8io9:C, 8io9:D, 8io9:E, 8io9:F, 8io9:G, 8io9:H, 8io9:I, 8io9:J, 8io9:K, 8io9:L, 8ioa:A, 8ioa:B, 8ioe:A, 8ioe:B, 8ioe:C, 8ioe:D, 8ioe:E, 8ioe:F, 8ioe:G, 8ioe:H, 8ioe:I, 8ioe:J, 8ioe:K, 8ioe:L
15 7p09:F 520 31 0.1264 0.0212 0.3548 2.7 7ksl:C, 7ksl:E, 7p0m:F
16 8ojl:A 777 31 0.1264 0.0142 0.3548 3.7 9cc0:A, 9cc0:C, 9cc0:E, 9cc0:B, 9cc0:D, 9cc0:F, 9cc3:B, 9cc3:C, 9cc3:D, 9cc3:E, 7krz:A, 7krz:C, 7krz:B, 7krz:D, 7krz:E, 7krz:F, 7ksl:B, 7ksl:A, 7ksl:F, 7ksm:B, 7ksm:A, 7ksm:C, 7ksm:D, 7ksm:E, 7ksm:F, 7nfy:A, 7nfy:B, 7nfy:C, 7nfy:E, 7nfy:D, 7nfy:F, 7ng4:B, 7ng4:C, 7ng4:D, 7ng4:A, 7ng4:E, 7ng4:F, 7ng5:A, 7ng5:D, 7ng5:B, 7ng5:C, 7ng5:E, 7ng5:F, 7ngc:A, 7ngc:B, 7ngc:C, 7ngc:D, 7ngc:E, 7ngc:F, 7ngf:A, 7ngf:F, 7ngf:B, 7ngf:C, 7ngf:D, 7ngf:E, 7ngl:A, 7ngl:B, 7ngl:C, 7ngl:D, 7ngl:E, 7ngl:F, 7ngp:A, 7ngp:B, 7ngp:C, 7ngp:D, 7ngp:E, 7ngp:F, 7ngq:A, 7ngq:B, 7ngq:C, 7ngq:D, 7ngq:E, 7ngq:F, 8ojl:B, 8ojl:C, 8ojl:D, 8ojl:E, 8ojl:F, 8oka:A, 8oka:B, 8oka:C, 8oka:D, 8oka:E, 8oka:F, 8om7:A, 8om7:B, 8om7:C, 8om7:D, 8om7:E, 8om7:F, 8ovf:A, 8ovf:B, 8ovf:C, 8ovf:D, 8ovf:E, 8ovf:F, 7oxo:A, 7oxo:B, 7oxo:C, 7oxo:D, 7oxo:E, 7oxo:F, 7p09:A, 7p09:B, 7p09:D, 7p09:C, 7p09:E, 7p0b:A, 7p0b:B, 7p0b:C, 7p0b:D, 7p0b:E, 7p0b:F, 7p0m:A, 7p0m:B, 7p0m:C, 7p0m:D, 7p0m:E, 6wzv:A, 6wzv:B, 6x1m:A, 6x1m:B, 6x27:A, 6x27:B, 6x27:C, 6x27:D, 6x27:E, 6x27:F, 6x27:G, 6x27:H, 6x27:I, 6x27:J, 6x27:K, 6x27:L
17 3n1c:A 309 27 0.1149 0.0324 0.3704 4.2 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
18 9b1l:A 529 20 0.1149 0.0189 0.5000 8.5 9b1g:A, 9b1h:A, 9b1i:A, 9b1j:A, 9b1k:A, 9b1m:A, 9b1n:A, 9b1o:A
19 8e5t:5 530 42 0.1609 0.0264 0.3333 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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