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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GVNDLWQILEPVKQHIPLRNLGGKTIAVNLSLWVCEAQTVKKMMGSVMKPHLRNLFFRISYLTQMDVKLVFVMEGEPPKL
QTRYGSSGKSWSQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF
TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQSLLQRFNRWNNEVENNIK
KKACCCEGFPFHEVIQEFLLNKDKLVKVIRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQL
QPIRIVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVYQKQKLEIKGKK

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5t9j:B 391 392 0.9949 0.9923 0.9898 0.0 5t9j:A
2 6tux:A 330 331 0.2641 0.3121 0.3112 6.44e-39 6tuw:A, 6tux:B
3 4q0z:A 322 329 0.2487 0.3012 0.2948 5.95e-33 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
4 4q0w:B 301 315 0.2333 0.3023 0.2889 4.20e-31 4q0r:A, 4q10:A, 4q10:B
5 1a76:A 315 287 0.1718 0.2127 0.2334 7.17e-24 1a77:A
6 5zog:A 316 230 0.1692 0.2089 0.2870 4.10e-23 1ul1:X, 5zoe:A, 5zof:A
7 5fv7:A 283 222 0.1692 0.2332 0.2973 8.79e-23 5fv7:B
8 1rxv:A 305 247 0.1692 0.2164 0.2672 4.55e-22 1rxv:B, 1rxw:A
9 5zod:A 260 190 0.1462 0.2192 0.3000 3.92e-20
10 6grd:A 407 318 0.2077 0.1990 0.2547 5.56e-20 5cnq:A, 5co8:C, 5co8:A, 6grb:A, 6grc:A
11 5k97:A 341 232 0.1564 0.1789 0.2629 6.07e-20 5kse:A, 3q8k:A, 3q8l:A, 3q8m:B, 3q8m:A, 5um9:A
12 7mxw:Z 350 272 0.1359 0.1514 0.1949 5.50e-05 7mxq:Z, 7mxr:Z, 7mxs:Z, 7mxt:Z, 7mxu:Z, 7mxv:Z, 7mxx:Z, 3qe9:Y, 3qe9:Z, 3qea:Z, 3qeb:Z, 5uzv:Z, 5v04:Z, 5v05:Z, 5v06:Z, 5v07:Z, 5v08:Z, 5v09:Z, 5v0a:Z, 5v0b:Z, 5v0c:Z, 5v0d:Z, 5v0e:Z
13 3pnu:A 338 64 0.0487 0.0562 0.2969 1.4 3pnu:B
14 6cv7:A 365 53 0.0436 0.0466 0.3208 2.5 4apx:B, 4aq8:C, 4aq8:D, 4aqa:B, 4aqe:B, 4axw:B, 6eb5:B, 6eb5:A, 6n22:A, 6n2e:A, 6n2e:B, 5uly:A, 5uly:D, 4xxw:B, 4xxw:A
15 7lsj:C 106 63 0.0410 0.1509 0.2540 5.3 7lsj:A, 7lsl:C, 7lsl:A, 7lsn:C, 7lsn:A
16 6ksy:B 289 54 0.0436 0.0588 0.3148 6.5 6ksy:A, 6ksy:C, 6ksy:D
17 3e49:A 307 54 0.0410 0.0521 0.2963 8.2 3e49:B, 3e49:C, 3e49:D
18 6mfo:A 333 53 0.0359 0.0420 0.2642 8.8
19 2arl:A 218 56 0.0436 0.0780 0.3036 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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