Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1pfi:B 46 46 1.0000 1.0000 1.0000 1.87e-25
2 6os0:A 395 32 0.2826 0.0329 0.4062 5.6 6os1:A, 6os2:A, 8th3:A, 8th4:A
3 7o0u:AA 49 23 0.1739 0.1633 0.3478 9.4 7o0u:AX, 7o0u:AB, 7o0u:AC, 7o0u:AD, 7o0u:AE, 7o0u:AG, 7o0u:AF, 7o0u:AH, 7o0u:AI, 7o0u:AJ, 7o0u:AK, 7o0u:AL, 7o0u:AM, 7o0u:AN, 7o0u:AO, 7o0u:AP, 7o0u:AQ, 7o0u:AR, 7o0u:AS, 7o0u:AT, 7o0u:AV, 7o0u:AU, 7o0u:AW, 7o0v:AA, 7o0v:AX, 7o0v:AB, 7o0v:AC, 7o0v:AD, 7o0v:AE, 7o0v:AF, 7o0v:AG, 7o0v:AH, 7o0v:AI, 7o0v:AJ, 7o0v:AK, 7o0v:AL, 7o0v:AM, 7o0v:AN, 7o0v:AO, 7o0v:AP, 7o0v:AQ, 7o0v:AR, 7o0v:AS, 7o0v:AT, 7o0v:AU, 7o0v:AV, 7o0v:AW, 7o0w:AA, 7o0w:AX, 7o0w:AB, 7o0w:AC, 7o0w:AD, 7o0w:AE, 7o0w:AF, 7o0w:AG, 7o0w:AH, 7o0w:AI, 7o0w:AJ, 7o0w:AK, 7o0w:AL, 7o0w:AM, 7o0w:AN, 7o0w:AO, 7o0w:AP, 7o0w:AQ, 7o0w:AR, 7o0w:AS, 7o0w:AT, 7o0w:AU, 7o0w:AV, 7o0w:AW, 7o0x:AA, 7o0x:AX, 7o0x:AB, 7o0x:AC, 7o0x:AD, 7o0x:AE, 7o0x:AG, 7o0x:AF, 7o0x:AH, 7o0x:AJ, 7o0x:AI, 7o0x:AK, 7o0x:AL, 7o0x:AM, 7o0x:AN, 7o0x:AO, 7o0x:AP, 7o0x:AQ, 7o0x:AR, 7o0x:AS, 7o0x:AT, 7o0x:AU, 7o0x:AV, 7o0x:AW

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417