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BioLiP
>protein
GTQGERCAVHGERLHLFCEKDGKALCWVCAQSRKHRDHAMVPLEE

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5olm:B 132 44 0.9778 0.3333 1.0000 1.17e-27 5jpx:A, 5olm:A
2 2yrg:A 59 42 0.4667 0.3559 0.5000 3.50e-11
3 4tn3:B 362 45 0.4667 0.0580 0.4667 3.86e-11 5k3q:A, 5k3q:B, 5k3q:C, 5k3q:D, 4tn3:A, 5w9a:A, 5w9a:B
4 5va4:A 123 39 0.4444 0.1626 0.5128 5.28e-10
5 5eiu:A 134 39 0.4444 0.1493 0.5128 9.14e-10 5eiu:D, 5f7t:E, 5f7t:F, 5f7t:H, 5f7t:L, 5iea:A, 5iea:B, 5iea:C, 5iea:D, 5iea:F, 5iea:K
6 2egm:A 57 37 0.4444 0.3509 0.5405 4.32e-09
7 2did:A 53 38 0.4222 0.3585 0.5000 6.71e-08 2dif:A
8 1fre:A 39 39 0.3778 0.4359 0.4359 1.14e-07
9 2csv:A 72 41 0.2889 0.1806 0.3171 2.82e-05
10 7xyz:B 456 41 0.3556 0.0351 0.3902 5.05e-04 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
11 7xt2:B 388 39 0.3333 0.0387 0.3846 0.002 7xt2:A
12 2dja:A 84 44 0.2889 0.1548 0.2955 0.006
13 2jun:A 101 34 0.2444 0.1089 0.3235 0.014 2dq5:A
14 6nlx:C 335 19 0.1778 0.0239 0.4211 0.49 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
15 7e0d:A 604 38 0.2222 0.0166 0.2632 6.7 7e0c:A, 2e1m:A, 2e1m:B, 2e1m:C, 8jpw:A
16 4zgn:A 279 16 0.1778 0.0287 0.5000 7.1 4zgp:A
17 7pub:CI 427 27 0.2000 0.0211 0.3333 9.6 6hiv:CI, 6hiw:CI, 7pua:CI, 6sg9:CI, 6sgb:CI
18 6yxy:BX 133 20 0.2444 0.0827 0.5500 9.7 7aoi:BX, 6hiv:BX, 6hix:BX

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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