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BioLiP
>protein
GTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fon:A 252 71 0.9718 0.2738 0.9718 2.94e-41 1do5:A, 1do5:B, 1do5:C, 1do5:D, 6fn8:A, 6fn8:B, 6fol:A, 6fol:D, 6fol:E, 6fol:H, 6fon:C, 6fp6:B, 6fp6:D, 6fp6:F, 6fp6:H, 6fp6:J, 6fp6:L, 6fp6:N, 6fp6:P, 6fp6:R, 6fp6:T, 6fp6:V, 6fp6:X, 2rsq:A
2 1fd8:A 73 59 0.3099 0.3014 0.3729 1.03e-06 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
3 5t7l:A 68 64 0.2676 0.2794 0.2969 2.19e-04 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
4 1afj:A 72 51 0.2535 0.2500 0.3529 0.007
5 1s6u:A 76 60 0.2394 0.2237 0.2833 0.042
6 6a71:B 71 57 0.2676 0.2676 0.3333 0.086 6a72:A
7 1kvj:A 79 30 0.1690 0.1519 0.4000 0.13 3cjk:B, 2k1r:A, 5t7l:B
8 4a48:B 69 56 0.2394 0.2464 0.3036 0.23 4a48:A, 4a4j:A, 2xmw:A
9 4y2i:A 65 51 0.1972 0.2154 0.2745 0.30
10 1gu6:A 441 61 0.2394 0.0385 0.2787 0.37 1gu6:G, 1gu6:C, 1gu6:E, 3l1t:A, 3l1t:B, 3l1t:C, 3l1t:D, 2rdz:A, 2rdz:B, 2rdz:C, 2rdz:D, 2rf7:A, 2rf7:B, 2rf7:C, 2rf7:D, 3tor:A, 3tor:D, 3tor:B, 3tor:C, 4wjy:A, 4wjy:B
11 1im5:A 179 50 0.2113 0.0838 0.3000 0.42
12 1k0v:A 73 28 0.1972 0.1918 0.5000 0.42 3i9z:A, 2qif:A, 2qif:B
13 4a46:A 63 53 0.1690 0.1905 0.2264 1.1 4a46:B, 4a46:C, 4a46:D, 4a47:A, 4a47:B, 4a47:C, 4a47:D, 2xmj:A, 2xmj:B, 2xmk:A, 2xmk:B, 2xmm:A, 2xmm:B, 2xmt:A, 2xmt:B, 2xmu:A, 2xmu:B, 2xmv:A, 2xmv:B, 2xmv:C, 2xmv:D, 2xmv:E, 2xmv:F
14 7si6:A 873 59 0.2394 0.0195 0.2881 3.4 7si3:A, 7si7:A
15 1y3j:A 77 27 0.1408 0.1299 0.3704 4.1
16 3vu1:B 490 34 0.1831 0.0265 0.3824 5.9 3vu1:A
17 8eti:D 391 27 0.1408 0.0256 0.3704 7.1
18 8esq:D 427 25 0.1408 0.0234 0.4000 9.2 8esr:D, 8eth:D, 8eup:D, 8euy:D, 8ev3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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