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BioLiP
>protein
GTITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAI
TLSGENDGAVFEL

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1l5p:A 93 93 1.0000 1.0000 1.0000 1.44e-63 1l5p:B, 1l5p:C
2 4ltu:A 106 85 0.2688 0.2358 0.2941 0.003 4ltu:B
3 6nbl:D 107 92 0.2688 0.2336 0.2717 0.004 1gpx:A, 5gxg:B, 4jws:C, 4jws:D, 4jwu:C, 4jwu:D, 4jx1:C, 4jx1:D, 4jx1:G, 4jx1:H, 3lb8:C, 3lb8:D, 2m56:B, 6nbl:C, 1oqq:A, 1oqq:B, 1oqr:A, 1oqr:B, 1oqr:C, 1pdx:A, 1put:A, 1r7s:A, 1r7s:B, 1r7s:C, 3w9c:B, 1xln:A, 1xln:B, 1xlo:A, 1xlo:B, 1xlp:A, 1xlp:B, 1xlp:C, 1xlq:A, 1xlq:B, 1xlq:C, 1yji:A, 1yjj:A
4 7eu3:8 119 48 0.1935 0.1513 0.3750 0.006 7f9o:8
5 7wff:c 128 44 0.1935 0.1406 0.4091 0.007 7wg5:c
6 3hui:A 112 89 0.2366 0.1964 0.2472 0.018
7 3lxf:A 104 97 0.2258 0.2019 0.2165 0.023 3lxf:B, 3lxf:C, 3lxf:D, 3lxf:E
8 2y5c:A 107 65 0.2258 0.1963 0.3231 0.10 2y5c:B
9 1e9m:A 106 97 0.2688 0.2358 0.2577 0.14 1uwm:A
10 1rfk:B 97 61 0.2043 0.1959 0.3115 0.90 3p63:A, 3p63:B, 1rfk:A
11 3zyy:X 628 45 0.1398 0.0207 0.2889 2.6 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
12 3qcp:A 410 30 0.1183 0.0268 0.3667 3.2 3qd9:A, 3qd9:B, 3qd9:C, 3qd9:D
13 5g0y:B 377 31 0.1183 0.0292 0.3548 5.9 5g0x:A, 5g0x:C, 5g0y:A, 5g10:A, 5g10:B, 5g11:A, 5g11:B, 5g12:A, 5g12:B, 5g13:A, 5g13:B, 5li3:A, 5li3:B
14 5jb3:J 127 33 0.1075 0.0787 0.3030 6.5 5jbh:J, 6sw9:J, 6swc:J, 6swd:J, 4v4n:BJ, 4v6u:AJ, 7zag:J, 7zah:J, 7zai:J, 7zhg:J
15 7plo:K 639 36 0.1613 0.0235 0.4167 7.6 8b9d:K, 7pfo:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218