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BioLiP
>protein
GTENLSDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLR
ILLLS

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2c60:A 85 85 1.0000 1.0000 1.0000 4.54e-58
2 7y4i:A 822 27 0.1294 0.0134 0.4074 1.1 8dti:A, 8dti:B
3 5xxb:O 158 31 0.1412 0.0759 0.3871 2.6
4 8bot:A 3528 23 0.1529 0.0037 0.5652 4.3
5 7nfc:A 3562 23 0.1529 0.0036 0.5652 4.3 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
6 7nfe:A 3585 23 0.1529 0.0036 0.5652 4.3
7 7sgl:A 3852 23 0.1529 0.0034 0.5652 4.3
8 8ezb:C 3724 23 0.1529 0.0035 0.5652 4.3 8ezb:L
9 7sud:A 3740 23 0.1529 0.0035 0.5652 4.5
10 7su3:A 3802 23 0.1529 0.0034 0.5652 4.5
11 7k1j:A 3584 23 0.1529 0.0036 0.5652 4.5 7k19:A
12 7k1k:A 3604 23 0.1529 0.0036 0.5652 4.5 7k1b:A
13 8eza:L 3720 23 0.1529 0.0035 0.5652 4.5 8eza:C, 7lt3:C, 7lt3:L
14 6zhe:A 3768 23 0.1529 0.0035 0.5652 4.5
15 7k1n:A 3634 23 0.1529 0.0036 0.5652 4.6 7z88:A
16 6zhe:F 3731 23 0.1529 0.0035 0.5652 4.6
17 7k0y:A 3669 23 0.1529 0.0035 0.5652 4.6
18 6zha:A 3707 23 0.1529 0.0035 0.5652 4.6 6zh8:A
19 5y3r:C 3636 23 0.1529 0.0036 0.5652 4.6
20 7k17:B 3645 23 0.1529 0.0036 0.5652 4.6 7k17:A
21 8ez9:L 3662 23 0.1529 0.0035 0.5652 4.6 8ez9:C
22 7z87:A 3689 23 0.1529 0.0035 0.5652 4.6
23 7otm:A 3656 23 0.1529 0.0036 0.5652 4.7 7otp:A, 7otv:A, 7otw:A, 7oty:A
24 6oif:A 282 38 0.1294 0.0390 0.2895 6.2 5j1s:A, 5j1t:A, 6oif:C, 6oif:B, 6oif:E, 6oif:D, 6oif:G, 6oif:F, 6oif:I, 6oif:H, 6oif:K, 6oif:J, 6oif:M, 6oif:L, 6oif:O, 6oif:N, 6oif:Q, 6oif:P, 6oif:S, 6oif:R, 6oif:U, 6oif:T, 6oif:W, 6oif:V, 6oif:Y, 6oif:X
25 5faw:B 806 46 0.1529 0.0161 0.2826 7.4 5fau:A, 5fau:B, 5fau:C, 5fau:D, 5faw:A, 5fay:A, 5fay:B, 6nd3:A, 6nd3:B, 6nd3:C, 6nd3:D, 6nd3:E, 6nd3:F, 6nd3:G, 6nd3:H, 6vue:A, 6vue:B
26 3kkz:A 256 34 0.1176 0.0391 0.2941 7.7 3kkz:B
27 7n8o:U 95 61 0.2235 0.2000 0.3115 9.4 7n8o:u, 7rcv:U, 7rcv:u, 8tow:U, 8tow:u
28 7kaw:C 593 23 0.1294 0.0185 0.4783 9.5 7kaw:B, 7kaz:C, 7kaz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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