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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQIQKTEIS
FRPNDPKSYEAYVLNIVRFLEKYKDSAQRDDMIFEDCGDVPSEPKERGDFNHERGERKVCRFKLEWLGNCSGLNDETYGY
KEGKPCIIIKLNRVLGFKPKPPKNESLETYPVMKYNPNVLPVQCTGKRDEDKDKVGNVEYFGLGNSPGFPLQYYPYYGKL
LQPKYLQPLLAVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVKS

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3wgv:B 303 294 0.9218 0.8944 0.9218 0.0 7d92:B, 7d93:D, 7d94:D, 7ddf:B, 7ddf:D, 7ddh:B, 7ddh:D, 7ddk:B, 7ddk:D, 7ddl:B, 7ddl:D, 7e1z:B, 7e20:B, 7e21:B, 4hqj:B, 4hqj:D, 4hyt:B, 4hyt:D, 8jbk:B, 8jbk:D, 8jbl:B, 8jbl:D, 8jbm:D, 3kdp:B, 3kdp:D, 4ret:B, 3wgv:D, 7wys:B, 7wys:D, 7wyt:D, 4xe5:B
2 7x21:B 277 277 0.8878 0.9422 0.9422 0.0 8ijl:B, 8ijm:B, 7x22:B, 7x24:B
3 7wyz:B 294 293 0.6429 0.6429 0.6451 4.04e-143 5avz:B, 5aw3:B, 7wyz:D, 7wz0:B, 7wz0:D, 7y45:D, 7y45:B, 7y46:D, 7y46:B
4 6jxk:B 271 292 0.3061 0.3321 0.3082 8.38e-44 7et1:B, 8ijv:B, 8ijw:B, 8ijx:B, 8jmn:B, 6jxh:B, 6jxi:B, 6jxj:B, 6jxk:F
5 4aui:C 308 87 0.0714 0.0682 0.2414 0.38 4aui:A, 4aui:B
6 3f70:A 392 43 0.0578 0.0434 0.3953 3.2
7 2vjy:A 562 45 0.0408 0.0214 0.2667 4.4 6efg:E, 6efh:A, 6efh:B, 2vjy:B, 2vjy:C, 2vjy:D, 2vk4:A, 2vk4:B, 2vk4:C, 2vk4:D
8 6efg:D 537 45 0.0408 0.0223 0.2667 4.5 6efg:A, 6efg:B
9 3mkw:B 115 24 0.0374 0.0957 0.4583 5.2 3mky:B, 3mkz:A, 3mkz:N, 3mkz:U
10 6scy:B 298 105 0.0986 0.0973 0.2762 5.4 6scy:A
11 7am2:BK 694 43 0.0408 0.0173 0.2791 7.6
12 6qdj:A 758 54 0.0476 0.0185 0.2593 8.7
13 3mm5:B 363 46 0.0340 0.0275 0.2174 9.3 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
14 7t9r:A 38 16 0.0238 0.1842 0.4375 9.7 7t9r:B, 7t9r:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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