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BioLiP
>protein
GSSGSSGSSSSCTVTTGTLGFGDKFKRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ebv:A 57 57 1.0000 1.0000 1.0000 6.86e-35
2 7mo3:B 38 37 0.5439 0.8158 0.8378 1.17e-18 7mo3:D, 7mo4:B, 7mo4:D
3 7mo2:B 38 37 0.3684 0.5526 0.5676 4.05e-10 3ch5:B, 7mo2:D
4 7mo5:B 36 34 0.3509 0.5556 0.5882 6.85e-10
5 7mnv:B 38 37 0.3333 0.5000 0.5135 5.89e-06
6 7mnt:B 38 39 0.2982 0.4474 0.4359 1.34e-05 7mnt:D, 7mnu:B
7 7mns:B 38 35 0.2632 0.3947 0.4286 1.74e-05
8 2ebq:A 47 29 0.2632 0.3191 0.5172 2.14e-05 2gqe:A, 2k0c:A
9 2ebr:A 47 26 0.2281 0.2766 0.5000 1.26e-04
10 7mo1:B 34 25 0.1930 0.3235 0.4400 0.001
11 7mnr:B 40 39 0.2281 0.3250 0.3333 0.002
12 7mnp:B 39 26 0.1754 0.2564 0.3846 0.017 7mnp:D, 7mnq:B
13 2d9g:A 53 26 0.2281 0.2453 0.5000 0.018
14 8pp6:K 36 26 0.2281 0.3611 0.5000 0.11
15 4a1g:B 149 20 0.1404 0.0537 0.4000 2.6 4a1g:A, 4a1g:C, 4a1g:D
16 7pcv:A 116 30 0.1930 0.0948 0.3667 3.5 2lk0:A, 2lk1:A, 7pcv:B, 7pdv:E, 7pdv:A, 7pdv:C, 7pdv:G
17 6fah:E 393 26 0.2105 0.0305 0.4615 5.2 6fah:A
18 1e3p:A 645 30 0.1930 0.0171 0.3667 5.8
19 7ld5:A 587 30 0.1930 0.0187 0.3667 5.9 7ld5:B, 7ld5:C
20 8wx0:A 597 30 0.1930 0.0184 0.3667 5.9 8wx0:B, 8wx0:C
21 1e8e:A 124 29 0.1930 0.0887 0.3793 8.0 1gu2:A, 1gu2:B, 1oae:A, 1oae:B
22 2czs:A 70 13 0.1404 0.1143 0.6154 8.1 2czs:B
23 3o0h:B 459 16 0.1404 0.0174 0.5000 9.1 3o0h:A
24 5k61:A 431 21 0.1754 0.0232 0.4762 9.6 5b62:A, 5k60:A, 5k62:A, 5k63:A, 5k66:A
25 3chv:A 279 11 0.1053 0.0215 0.5455 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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