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BioLiP
>protein
GSSGSSGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALV

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2eod:A 66 66 1.0000 1.0000 1.0000 2.20e-45
2 7l3l:A 141 46 0.2576 0.1206 0.3696 0.016 7l3l:C
3 2eoi:A 44 24 0.1818 0.2727 0.5000 0.090
4 2epy:A 42 24 0.1818 0.2857 0.5000 0.094
5 2yuc:A 76 25 0.1667 0.1447 0.4400 0.21
6 2yuc:A 76 27 0.1364 0.1184 0.3333 5.8
7 2em1:A 44 24 0.1818 0.2727 0.5000 0.36
8 2eok:A 42 24 0.1818 0.2857 0.5000 0.53
9 2emv:A 44 26 0.1970 0.2955 0.5000 0.60
10 2eqw:A 42 21 0.1818 0.2857 0.5714 0.69
11 2csh:A 110 61 0.3333 0.2000 0.3607 0.70
12 2ept:A 41 20 0.1818 0.2927 0.6000 1.1
13 2eol:A 42 20 0.1818 0.2857 0.6000 2.0
14 2emw:A 44 20 0.1667 0.2500 0.5500 3.3
15 1wfe:A 86 38 0.1667 0.1279 0.2895 3.5
16 2emz:A 46 23 0.1667 0.2391 0.4783 4.6
17 2yrh:A 44 20 0.1818 0.2727 0.6000 4.7
18 4lv7:A 390 33 0.1970 0.0333 0.3939 5.7 3uds:A, 3uds:B
19 2en0:A 42 24 0.1667 0.2619 0.4583 6.1
20 3szm:C 191 29 0.1364 0.0471 0.3103 6.5 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
21 5ah5:A 789 30 0.1818 0.0152 0.4000 7.3 5ah5:B
22 1c9k:B 180 29 0.1515 0.0556 0.3448 7.5 1c9k:A, 1c9k:C
23 5t57:A 276 21 0.1212 0.0290 0.3810 8.9
24 2yta:A 41 20 0.1667 0.2683 0.5500 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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