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BioLiP
>protein
GSQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIVTD

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2lkx:A 68 68 1.0000 1.0000 1.0000 4.94e-45
2 8osb:E 62 60 0.5882 0.6452 0.6667 3.77e-23
3 3a01:F 61 60 0.5735 0.6393 0.6500 8.57e-22 3a01:B, 3lnq:A
4 3cmy:A 60 59 0.5588 0.6333 0.6441 3.29e-21
5 1fjl:A 65 58 0.5441 0.5692 0.6379 1.04e-20 1fjl:B, 1fjl:C
6 9b8u:B 66 51 0.4559 0.4697 0.6078 4.88e-17 9b8u:A, 9b8u:C, 9b8u:D
7 2me6:A 71 60 0.4265 0.4085 0.4833 3.05e-15
8 2h1k:B 60 59 0.4265 0.4833 0.4915 3.19e-13 2h1k:A
9 8eml:A 58 56 0.4265 0.5000 0.5179 1.05e-12 8eml:B
10 8pna:A 67 57 0.3382 0.3433 0.4035 7.64e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
11 1b72:A 68 56 0.4118 0.4118 0.5000 1.06e-11
12 8ejo:A 56 54 0.3382 0.4107 0.4259 1.24e-11 8ejo:B, 8ejp:A, 8ejp:B
13 6e8c:A 135 54 0.3529 0.1778 0.4444 8.08e-11 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
14 6e8c:A 135 47 0.2941 0.1481 0.4255 1.02e-08 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
15 2r5z:A 75 56 0.4118 0.3733 0.5000 1.24e-10 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
16 1ig7:A 58 57 0.3529 0.4138 0.4211 4.93e-10
17 4rdu:D 62 57 0.3235 0.3548 0.3860 1.37e-09 4rdu:A, 4xrs:I, 4xrs:G
18 3a01:A 78 57 0.3382 0.2949 0.4035 3.36e-09 3a01:E
19 1ahd:P 68 57 0.3824 0.3824 0.4561 3.97e-09
20 1puf:A 77 59 0.3824 0.3377 0.4407 4.55e-09 2lp0:A
21 2ld5:A 67 57 0.3382 0.3433 0.4035 8.70e-09
22 6m3d:C 108 56 0.3382 0.2130 0.4107 1.07e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
23 6m3d:C 108 53 0.3088 0.1944 0.3962 2.03e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
24 1jgg:A 57 53 0.3529 0.4211 0.4528 2.14e-08 1jgg:B
25 6es3:K 72 54 0.3382 0.3194 0.4259 3.68e-08 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
26 1zq3:P 68 52 0.3382 0.3382 0.4423 3.97e-08
27 3rkq:A 58 54 0.3088 0.3621 0.3889 1.09e-07 3rkq:B
28 5eea:G 63 57 0.2941 0.3175 0.3509 1.21e-07 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
29 8ik5:C 67 57 0.3382 0.3433 0.4035 2.17e-07 8ike:C, 8ilw:C
30 1nk2:P 77 55 0.3235 0.2857 0.4000 5.12e-07 1nk3:P
31 5hod:A 61 54 0.3088 0.3443 0.3889 7.46e-07 5hod:D
32 3d1n:I 150 53 0.3235 0.1467 0.4151 2.05e-06 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
33 4uus:A 67 51 0.3088 0.3134 0.4118 2.84e-06 4uus:E
34 4rbo:A 55 50 0.2794 0.3455 0.3800 6.77e-06 4rbo:D
35 4qtr:C 57 54 0.2794 0.3333 0.3519 1.09e-05 4qtr:A, 4qtr:B, 4qtr:D
36 4cyc:A 66 51 0.3088 0.3182 0.4118 1.09e-05 1b8i:A
37 5flv:M 229 48 0.2794 0.0830 0.3958 1.14e-05 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
38 5zjr:A 64 54 0.3235 0.3438 0.4074 3.22e-05 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
39 1lfu:P 82 60 0.2941 0.2439 0.3333 7.07e-05 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
40 4j19:A 77 64 0.3088 0.2727 0.3281 6.63e-04 4j19:B
41 4egc:A 539 45 0.2647 0.0334 0.4000 7.76e-04
42 1le8:A 53 49 0.2353 0.3019 0.3265 0.003 1akh:A, 1yrn:A
43 1gt0:C 137 54 0.2794 0.1387 0.3519 0.008 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
44 3l1p:A 147 59 0.2794 0.1293 0.3220 0.019 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
45 8bx1:A 127 42 0.2353 0.1260 0.3810 0.032
46 8g8e:X 140 57 0.2794 0.1357 0.3333 0.034 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
47 5u1e:A 321 50 0.2500 0.0530 0.3400 0.11 5tyq:A, 5u0n:A, 5u0t:A, 5u18:A, 5u19:A, 5u1i:A, 5u4t:A
48 1mnm:C 77 60 0.2794 0.2468 0.3167 0.58 1mnm:D
49 7xrc:C 134 40 0.2206 0.1119 0.3750 1.3 2xsd:C
50 1akh:B 78 55 0.2647 0.2308 0.3273 1.3 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
51 8u0w:A 1099 41 0.2059 0.0127 0.3415 1.6
52 8u3k:A 1150 41 0.2059 0.0122 0.3415 1.6 9ezy:A, 8u3k:F
53 9bf5:C 1190 41 0.2059 0.0118 0.3415 1.7 9bf5:D, 9c6q:C
54 8u0u:A 1126 41 0.2059 0.0124 0.3415 1.7 8u0u:F
55 5wc9:A 136 55 0.2647 0.1324 0.3273 2.9 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
56 7pul:A 347 24 0.1471 0.0288 0.4167 4.6
57 5ahk:A 555 42 0.1765 0.0216 0.2857 6.4 5ahk:B
58 2v9k:A 467 51 0.2059 0.0300 0.2745 8.1
59 8c81:C 561 42 0.2059 0.0250 0.3333 9.0 8c80:C, 8c82:C, 8c82:G, 8iaj:B, 8iaj:F, 8iak:B, 8iak:F, 8iam:B, 8iam:F, 8qof:C, 8qof:G, 8qog:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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