Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKQDILLAQDLEDMWEQKFLQF
KLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCG
HYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8any:e 238 238 1.0000 0.9580 0.9580 7.63e-168 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e
2 6nu2:e 217 227 0.9386 0.9862 0.9427 2.88e-154
3 8oin:Bv 238 238 0.8816 0.8445 0.8445 7.59e-150 7nsj:Bj, 8oiq:Bv
4 6gaw:Bj 217 227 0.8377 0.8802 0.8414 5.56e-139 6gb2:Bj, 7nqh:Bj, 7nql:Bj, 7nsh:Bj, 7nsi:Bj, 6ydp:Bj, 6ydw:Bj
5 7of0:e 197 227 0.8640 1.0000 0.8678 5.62e-139 7of3:e, 7of5:e, 7of7:e
6 6ywe:6 273 141 0.2018 0.1685 0.3262 1.93e-12 6yws:6, 6ywv:6, 6ywx:6, 6ywy:6
7 5mrc:6 234 144 0.1974 0.1923 0.3125 2.22e-09 5mre:6, 5mrf:6
8 3j6b:6 209 144 0.1930 0.2105 0.3056 5.06e-06
9 5gg6:B 295 121 0.1447 0.1119 0.2727 0.030 5gg6:A, 5gg7:A, 5gg7:B, 5gg8:A, 5gg9:A, 5gga:A, 5ggb:A, 5ggc:A, 5ggc:B, 5ggd:A, 5ggd:B, 6m65:A, 6m69:A, 6m6y:A, 6m72:A, 5xd1:A, 5xd2:A, 5xd3:A, 5xd4:A, 5xd5:B, 5xd5:A
10 1jkn:A 165 130 0.1579 0.2182 0.2769 0.10
11 5dl7:A 402 84 0.1009 0.0572 0.2738 0.86
12 7ysf:A 113 50 0.0746 0.1504 0.3400 1.2
13 8c8v:A 1032 34 0.0570 0.0126 0.3824 5.0 8c8u:A, 8c8w:A, 8c9d:A
14 7nqf:B 219 33 0.0482 0.0502 0.3333 6.9 7nqe:A, 7nqf:A, 7p9j:B, 7p9j:A, 7p9j:C, 7qaz:B, 7qaz:A, 7qaz:C
15 8wi0:A 1220 50 0.0789 0.0148 0.3600 8.3 8kci:A, 8wi2:A, 8wi5:A
16 3urh:B 465 54 0.0658 0.0323 0.2778 8.7 3urh:A
17 1vc8:A 126 35 0.0570 0.1032 0.3714 9.2 1vc8:B, 1vc9:A, 1vc9:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218