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BioLiP
>protein
GSMLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTK
VEHIGAKPSIDLEDPLIF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d3p:E 100 98 1.0000 0.9800 1.0000 1.96e-69 8d3l:F, 8d3l:E, 8d3m:F, 8d3m:E, 8d3p:F, 8d3q:F, 8d3q:E
2 7cr8:M 93 74 0.2755 0.2903 0.3649 1.53e-08 7cr6:E, 7cr6:F, 7cr8:N, 7cr8:U, 7cr8:V, 7cr8:e, 7cr8:f, 7cr8:m, 7cr8:n, 7cr8:u, 7cr8:v, 7cr8:E, 7cr8:F
3 2ik0:B 286 66 0.2041 0.0699 0.3030 0.23 117e:A, 117e:B, 1e6a:A, 1e6a:B, 1e9g:A, 1e9g:B, 1huj:A, 1huj:B, 1huk:A, 1huk:B, 2ihp:A, 2ihp:B, 2ik0:A, 2ik1:A, 2ik1:B, 2ik2:A, 2ik2:B, 2ik4:A, 2ik4:B, 2ik6:A, 2ik6:B, 2ik7:A, 2ik7:B, 2ik9:A, 1m38:A, 1m38:B, 8prk:A, 8prk:B, 1wgi:A, 1wgi:B, 1wgj:A, 1wgj:B, 1ypp:A, 1ypp:B
4 2b7j:A 158 38 0.1224 0.0759 0.3158 2.8 2b7j:C
5 1cen:A 334 52 0.1837 0.0539 0.3462 3.0
6 6ck7:A 172 62 0.1531 0.0872 0.2419 3.1 6ck7:B, 6ck7:C, 6ck7:D
7 6zpi:C 332 69 0.1735 0.0512 0.2464 5.8 4bn2:A, 4bn2:B, 6zph:B
8 1i7l:A 309 57 0.1837 0.0583 0.3158 6.6 1i7l:B
9 7unv:I 118 52 0.1429 0.1186 0.2692 6.7 7unr:I, 7unu:I, 7unw:I
10 5de3:A 166 58 0.1633 0.0964 0.2759 9.1 5di3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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