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BioLiP
>protein
GSHMTDLAGPTITPNLQLVYVSNVERSTDFYRFIFKKEPVFVTPRYVAFPSSGDALFAIWSGGEEPVAEIPRFSEIGIML
PTGEDVDKLFNEWTKQKSHQIIVIKEPYTDVFGRTFLISDPDGHIIRVCPLD

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sk2:A 132 132 1.0000 1.0000 1.0000 2.66e-96 3sk2:B
2 1c39:A 152 68 0.1742 0.1513 0.3382 0.44 1c39:B, 3k41:A, 3k41:B, 3k42:A, 1m6p:A, 1m6p:B, 2rl8:A, 2rl8:B, 2rl9:A, 2rl9:B, 2rlb:A, 2rlb:B
3 4jd1:B 148 104 0.2197 0.1959 0.2788 0.77 5f6q:A, 5f6q:B, 4ir0:A, 4ir0:B, 4jd1:A
4 2dhr:A 458 74 0.1439 0.0415 0.2568 1.0 2dhr:B, 2dhr:C, 2dhr:D, 2dhr:E, 2dhr:F, 4eiw:A, 4eiw:B, 4eiw:C, 4eiw:D, 4eiw:E, 4eiw:F, 1iy0:A, 1iy1:A
5 6qig:A 581 87 0.2121 0.0482 0.3218 1.4 3ghm:A, 3ghn:A, 3vn4:A
6 5gan:B 1781 99 0.1970 0.0146 0.2626 1.7 4bgd:A, 5gao:B, 5gap:B, 5nrl:B, 5zwm:D, 5zwo:D
7 7n7g:A 138 110 0.1970 0.1884 0.2364 2.6 7n7g:B
8 4hg0:A 232 30 0.0758 0.0431 0.3333 3.0 3nqr:A, 3nqr:B, 3nqr:C, 3nqr:D, 5yz2:A, 5yz2:B
9 3oi8:A 156 30 0.0758 0.0641 0.3333 3.2 3oi8:B
10 6bbx:A 121 115 0.2273 0.2479 0.2609 4.1 6bbx:B, 5ujp:A, 5ujp:B, 5umx:A, 5umx:B, 5umy:A, 5umy:B, 5w27:A, 5w27:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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