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BioLiP
>protein
GSHMSDSNTITSFQVDCYLWHIRKLLSMRDMCDAPFDDRLRRDQKALKGRGSTLGLDLRVATMEGKKIVEDILKSET

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zlc:A 77 77 1.0000 1.0000 1.0000 3.75e-53 6sx0:A, 6sx0:B, 6sx2:A, 6sx2:B, 6zlc:B
2 2z0a:A 72 71 0.5974 0.6389 0.6479 8.21e-31 2z0a:C, 2z0a:D, 2zko:A, 2zko:B
3 4q56:A 101 18 0.1169 0.0891 0.5000 1.0
4 3hq7:A 304 26 0.1688 0.0428 0.5000 1.7
5 3hq6:A 324 26 0.1688 0.0401 0.5000 1.7 3hq6:B, 3hq8:A, 3hq8:B, 3hq9:A, 3hq9:B
6 4g9i:A 766 51 0.1948 0.0196 0.2941 4.3 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
7 8dk2:C 723 53 0.2338 0.0249 0.3396 6.0 8dk2:D
8 8hyk:A 306 21 0.1039 0.0261 0.3810 6.1 7x4p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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