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BioLiP
>protein
GSHMRLNGLSPQQQQQTLATLVAAATATVLGHHTPESISPATAFKDLGIDSLTALELRNTLTHNTGLDLPPTLIFDHPTP
HALTQHLHTRLTQSH

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hv8:A 95 95 1.0000 1.0000 1.0000 8.44e-63
2 2liw:A 99 90 0.2947 0.2828 0.3111 8.32e-07
3 8qzi:E 86 93 0.3158 0.3488 0.3226 1.74e-06 7bdw:B, 6rcx:B
4 8ahq:C 78 59 0.1895 0.2308 0.3051 2.94e-06 8ahq:D
5 5zk4:D 73 54 0.2000 0.2603 0.3519 1.85e-05
6 2kr5:A 89 54 0.1895 0.2022 0.3333 1.44e-04
7 8cg6:C 75 44 0.1474 0.1867 0.3182 0.005
8 2eht:A 77 55 0.2000 0.2468 0.3455 0.019
9 8jfh:E 79 34 0.1474 0.1772 0.4118 0.041 8jfn:B
10 8w2d:A 322 59 0.2421 0.0714 0.3898 0.044 8w2d:B
11 8e73:AB 85 37 0.1474 0.1647 0.3784 0.056
12 8bee:U 87 37 0.1368 0.1494 0.3514 0.058 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
13 8cuy:A 1016 75 0.2105 0.0197 0.2667 0.067
14 7arc:U 84 30 0.1368 0.1548 0.4333 0.074 7ard:U
15 6d8i:A 79 81 0.2211 0.2658 0.2593 0.086
16 4mrt:C 77 47 0.1474 0.1818 0.2979 0.088
17 1j3m:A 127 48 0.1579 0.1181 0.3125 0.16
18 7ak6:U 88 37 0.1474 0.1591 0.3784 0.23 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
19 2ll8:A 101 36 0.1579 0.1485 0.4167 0.26
20 5mss:A 717 53 0.2000 0.0265 0.3585 0.45 5mst:A, 5mst:B, 5msw:A
21 4rs0:A 557 47 0.1474 0.0251 0.2979 0.67 6bl3:A, 6bl3:B, 6bl3:C, 6bl3:D, 6bl4:A, 6bl4:B, 6bl4:C, 6bl4:D, 4cox:A, 4cox:B, 4cox:C, 4cox:D, 5cox:A, 5cox:B, 5cox:C, 5cox:D, 6cox:A, 6cox:B, 1cvu:B, 1cvu:A, 1cx2:A, 1cx2:B, 1cx2:C, 1cx2:D, 1ddx:A, 1ddx:B, 1ddx:C, 1ddx:D, 4e1g:A, 4e1g:B, 8et0:A, 8et0:B, 5fdq:A, 5fdq:B, 4fm5:A, 4fm5:B, 4fm5:C, 4fm5:D, 3hs5:A, 3hs5:B, 3hs6:A, 3hs6:B, 3hs7:A, 3hs7:B, 5jvy:A, 5jvy:B, 5jvz:A, 5jvz:B, 5jw1:A, 5jw1:B, 3krk:A, 3krk:B, 3ln0:A, 3ln0:B, 3ln0:C, 3ln0:D, 3ln1:A, 3ln1:B, 3ln1:C, 3ln1:D, 4m10:A, 4m10:B, 4m10:C, 4m10:D, 4m11:A, 4m11:B, 4m11:C, 4m11:D, 3mdl:A, 3mdl:B, 3mqe:A, 3mqe:B, 3mqe:C, 3mqe:D, 3nt1:A, 3nt1:B, 3ntb:A, 3ntb:B, 3ntb:C, 3ntb:D, 3ntg:A, 3ntg:B, 3ntg:C, 3ntg:D, 6ofy:A, 6ofy:B, 3olt:A, 3olt:B, 3olu:A, 3olu:B, 4otj:A, 4otj:B, 4otj:C, 4otj:D, 4oty:A, 4oty:B, 3pgh:A, 3pgh:B, 3pgh:C, 3pgh:D, 4ph9:A, 4ph9:B, 1pxx:A, 1pxx:B, 1pxx:C, 1pxx:D, 3q7d:A, 3q7d:B, 3qh0:A, 3qh0:B, 3qmo:A, 3qmo:B, 3rr3:A, 3rr3:B, 3rr3:C, 3rr3:D, 4rrw:A, 4rrw:B, 4rrw:C, 4rrw:D, 4rrx:A, 4rrx:B, 4rrz:A, 4rrz:B, 4rrz:C, 4rrz:D, 4rut:A, 4rut:B, 4rut:C, 4rut:D, 3tzi:A, 3tzi:B, 6v3r:A, 6v3r:B, 6v3r:C, 6v3r:D, 5w58:A, 4z0l:A, 4z0l:B, 4z0l:C, 4z0l:D
22 2vsq:A 1273 44 0.1474 0.0110 0.3182 0.83
23 5msr:B 520 38 0.1474 0.0269 0.3684 1.1 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
24 7ar7:T 84 37 0.1263 0.1429 0.3243 1.4 7ar8:T, 8bq6:T
25 2k0x:A 86 51 0.1474 0.1628 0.2745 1.5 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
26 7b0n:U 88 25 0.1053 0.1136 0.4000 1.7 6rfq:Q, 6rfr:Q, 6y79:Q
27 6n8e:A 1332 51 0.1684 0.0120 0.3137 1.8
28 2qnw:A 80 34 0.1368 0.1625 0.3824 2.5
29 2fac:A 77 54 0.1684 0.2078 0.2963 2.9 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
30 6alm:A 338 40 0.1579 0.0444 0.3750 5.7 6aln:A, 6alo:A, 6alp:A, 6alq:A, 6alr:A, 6dax:A, 6daz:A, 6db2:A, 9eqf:A, 6mp9:A, 2wbo:A, 2wbp:A, 2wbq:A, 6y0n:A, 6y12:A
31 6mp8:A 308 40 0.1579 0.0487 0.3750 5.8
32 8bwl:A 105 44 0.1684 0.1524 0.3636 7.3 8bwl:B, 8bwm:A, 8bwm:B, 8bwn:A, 8bwn:B
33 5kp8:B 78 33 0.1053 0.1282 0.3030 7.3
34 7zmb:Q 85 87 0.2000 0.2235 0.2184 8.1 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
35 6mg0:B 1687 50 0.1789 0.0101 0.3400 8.2
36 8odw:A 612 87 0.1895 0.0294 0.2069 8.6 8odw:B
37 5vit:A 548 47 0.1579 0.0274 0.3191 8.6 5vit:P, 5vit:I, 5vit:V
38 7en2:B 1410 48 0.1579 0.0106 0.3125 9.0 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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