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BioLiP
>protein
GSHMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRK

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bsu:G 50 50 1.0000 1.0000 1.0000 2.65e-32 3bsu:A, 3bsu:B, 3bsu:C, 3bsu:F, 3bsu:H
2 6rmn:B 222 45 0.2800 0.0631 0.3111 0.26 6shx:B, 6sns:B, 6snv:B, 6snv:E
3 5jy7:B 571 33 0.2400 0.0210 0.3636 1.7 5jy7:A, 5jy7:C, 5jy7:D, 5jy7:E, 5jy7:F, 5jy7:G, 5jy7:H, 3zo9:A, 3zo9:B, 3zoa:B, 3zoa:A
4 6vly:A 293 22 0.2000 0.0341 0.4545 3.9 6vly:B, 6vly:C, 6vly:D
5 8xuq:A 885 35 0.2400 0.0136 0.3429 4.2 8xuo:A, 8xuo:G, 8xuq:E, 8xuq:F, 8xuq:G, 8xuv:A, 8xuv:B, 8xuv:C, 8xuv:D, 8xuv:E, 8xuv:F, 8xuv:G, 8xuv:H, 8xuv:I, 8xuv:J, 8xuv:K, 8xuv:L
6 4v6w:AT 154 24 0.2000 0.0649 0.4167 4.4 6xu6:AT, 6xu7:AT, 6xu8:AT
7 2cww:B 382 23 0.2000 0.0262 0.4348 4.5 2cww:A
8 6z1p:BI 1413 37 0.2400 0.0085 0.3243 6.0
9 8rfh:A 730 14 0.1600 0.0110 0.5714 7.6 8rfh:B
10 9fp6:A 732 14 0.1600 0.0109 0.5714 8.5 9fp6:B, 9fp6:C, 9fp6:D, 9fp6:E, 9fp6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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