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BioLiP
>protein
GSHMANKRNEALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILT
NK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1zs4:A 82 82 1.0000 1.0000 1.0000 2.21e-55 8igr:A, 8igr:C, 8igr:B, 8igr:D, 1zs4:C, 1zs4:B, 1zs4:D
2 8gqp:A 62 18 0.0976 0.1290 0.4444 7.4 8gqp:C, 7yh8:A, 7yh8:C
3 2eqd:A 510 25 0.1098 0.0176 0.3600 8.4 2e0p:A, 2e4t:A, 2eex:A, 2ej1:A, 2eo7:A
4 3lf0:A 99 46 0.1829 0.1515 0.3261 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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