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BioLiP
>protein
GSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEG
GAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHI
PDSPFVVPVASP

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4p3w:A 172 171 0.9942 0.9942 1.0000 2.86e-124 2brq:A, 2brq:B, 3isw:A, 3isw:B, 2jf1:A, 2mtp:A, 4p3w:B, 4p3w:E, 4p3w:F, 4p3w:D, 4p3w:C, 7sft:A, 2w0p:A, 2w0p:B
2 2k9u:A 119 102 0.5465 0.7899 0.9216 2.08e-64
3 2k9u:A 119 81 0.1395 0.2017 0.2963 0.11
4 2bp3:A 91 88 0.2616 0.4945 0.5114 1.46e-27 2bp3:B
5 2bp3:A 91 44 0.0930 0.1758 0.3636 0.001 2bp3:B
6 4mgx:A 181 84 0.2267 0.2155 0.4643 1.08e-16
7 4mgx:A 181 129 0.2326 0.2210 0.3101 2.50e-08
8 4mgx:A 181 55 0.0756 0.0718 0.2364 0.30
9 6fq3:A 390 97 0.1860 0.0821 0.3299 2.13e-05 6fql:A
10 6fq3:A 390 65 0.1279 0.0564 0.3385 2.29e-05 6fql:A
11 1k83:A 1366 102 0.1279 0.0161 0.2157 4.5 1twa:A, 1twc:A, 1twg:A, 1twh:A
12 7edd:A 1394 55 0.1047 0.0129 0.3273 9.1 5xyr:A
13 5kbk:A 157 31 0.0814 0.0892 0.4516 9.2 5kbl:A, 5kbm:A, 4n3t:A, 4n3u:A
14 5xya:A 1358 55 0.1047 0.0133 0.3273 9.3 5xxz:A
15 5xxz:B 1310 55 0.1047 0.0137 0.3273 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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