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BioLiP
>protein
GSGQMFGNGKGSYFITSKDNETGITGIRVFVGPVGLIKSIQVRYGSSWSEKYGIPGGKAHELILHPGEHIISIYGRYRTF
LQHVTLITNQGRSASFGLETGKGFFAAPNLTGQVLEGVYGQFWLYGITGIGFTWGFP

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3woc:A 138 137 1.0000 0.9928 1.0000 5.93e-96 3woc:B, 3woc:C, 3woc:D, 3woc:E, 3woc:F
2 3apa:A 138 111 0.2993 0.2971 0.3694 7.18e-17 3vy6:A, 3vy7:A, 3vze:A, 3vzf:A, 3vzg:A
3 4pit:B 144 99 0.2044 0.1944 0.2828 0.001 2bmz:A, 2bmz:B, 2bn0:A, 2bn0:B, 8hyf:A, 3mit:A, 3mit:B, 3miu:A, 3miu:B, 3miv:B, 4pik:B, 4pik:C, 4pik:D, 4pik:A, 4pit:A, 4pit:C, 4pit:D, 1x1v:A, 1x1v:B
4 6fly:A 144 105 0.2044 0.1944 0.2667 0.007 6fly:B, 6flz:A, 6flz:B
5 4zno:A 318 67 0.1460 0.0629 0.2985 0.21 4zno:B, 4znq:A, 4znq:B, 4znr:A, 4znr:B
6 5yrf:B 142 72 0.1460 0.1408 0.2778 3.3 5yrf:A, 5yrg:A, 5yrg:B, 5yri:B, 5yri:A, 5yrj:A, 5yrj:B, 5yrl:A, 5yrl:B, 5yrm:B
7 5jwz:A 724 88 0.1898 0.0359 0.2955 6.0 5jwz:B
8 3mdo:A 365 73 0.1387 0.0521 0.2603 6.1 3mdo:B
9 3syb:A 408 19 0.0803 0.0270 0.5789 9.2
10 3in6:A 147 35 0.0876 0.0816 0.3429 9.6 3in6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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