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BioLiP
>protein
GSDSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRAD

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rsd:A 68 68 1.0000 1.0000 1.0000 9.89e-47
2 1wew:A 78 68 0.5735 0.5000 0.5735 1.09e-25
3 2lv9:A 80 53 0.2794 0.2375 0.3585 2.29e-05 4l58:A
4 5tab:A 53 53 0.3235 0.4151 0.4151 3.41e-05
5 5tbn:A 57 53 0.3235 0.3860 0.4151 4.36e-05
6 3o70:A 55 59 0.2941 0.3636 0.3390 2.12e-04 3o7a:A
7 6wxk:B 51 53 0.2500 0.3333 0.3208 0.002 6wxk:A, 6wxk:C, 6wxk:D, 6wxk:E
8 9c0o:A 63 56 0.2647 0.2857 0.3214 0.008
9 1wes:A 71 64 0.2647 0.2535 0.2812 0.009 2g6q:A
10 7y0i:A 56 33 0.2059 0.2500 0.4242 0.015
11 6j2p:A 98 53 0.2353 0.1633 0.3019 0.079 6j2p:B, 6j2p:D, 6j2p:C
12 1wem:A 76 48 0.2647 0.2368 0.3750 0.12 4l7x:A, 2m3h:A
13 2qic:A 51 54 0.2353 0.3137 0.2963 0.44
14 2m85:A 65 58 0.2353 0.2462 0.2759 0.47
15 8i0w:v 144 24 0.1471 0.0694 0.4167 2.2 5xjc:v, 5yzg:v
16 1wee:A 72 54 0.2353 0.2222 0.2963 2.6
17 4yj1:A 600 28 0.1471 0.0167 0.3571 2.7 4yix:A, 4yiy:B, 4yiy:A
18 2f6j:A 168 36 0.2059 0.0833 0.3889 2.9 8ag2:A, 6aze:A, 7dmy:A, 7dn4:A, 7dn4:B, 7dn4:C, 7dn4:D, 7dn4:E, 7dn4:F, 7f5c:A, 7f5d:A, 7f5e:A, 2f6j:B, 2f6j:C, 2f6n:A, 2f6n:B, 8f6g:A, 2fsa:A, 2fsa:B, 2fsa:C, 2fuu:A, 5h6y:A, 7k6r:A, 7k6s:A, 7kdw:A, 7kdw:B, 7kdz:A, 7lp0:A, 7lp0:B, 7lpk:A, 7lpk:B, 7lrk:A, 7lrk:B, 7lro:A, 7lro:B, 6lu5:A, 6lu6:A, 7m2e:A, 8ou2:A, 8ou2:B, 3qzs:A, 3qzs:B, 3qzt:A, 3qzv:A, 5r4g:A, 5r4h:A, 5r4i:A, 5r4j:A, 5r4k:A, 5r4l:A, 5r4m:A, 5r4n:A, 2ri7:A, 7rwn:A, 7rwo:A, 7rwp:A, 7rwq:A, 7vd4:A
19 3kak:B 437 24 0.1765 0.0275 0.5000 3.1
20 3kal:A 470 24 0.1765 0.0255 0.5000 3.1 3kak:A, 3kal:B
21 6k31:A 1109 27 0.1765 0.0108 0.4444 5.5 6k31:B
22 1bd2:D 190 24 0.1324 0.0474 0.3750 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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