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BioLiP
>protein
GSDEDTYYLQVRGRENFEILMKLKESLELMEL

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wqj:C 32 32 1.0000 1.0000 1.0000 7.16e-17
2 2wtt:L 46 28 0.8750 0.6087 1.0000 7.53e-14 2wqj:K, 2wqj:Z, 2wtt:N, 2wtt:O, 2wtt:P
3 4d1l:F 38 29 0.5312 0.4474 0.5862 1.80e-05 4cz5:C, 4cz6:D
4 4mzr:A 234 29 0.4062 0.0556 0.4483 0.018 4mzr:B, 4mzr:C, 4mzr:D, 3q01:A, 3q01:B, 3q05:A, 3q05:C, 3q05:B, 3q05:D, 3q06:A, 3q06:C, 3q06:D, 3q06:B, 3ts8:A, 3ts8:B, 3ts8:C, 3ts8:D
5 7bwn:J 280 25 0.3750 0.0429 0.4800 0.24 7bwn:O, 7bwn:C, 7bwn:M, 4gf6:B, 4w74:A, 4w74:B, 4w74:H, 4w74:C, 4w74:D, 4w74:E, 4w76:A, 4w76:B, 4w77:A, 4w77:B, 4w7a:A, 4w7a:B, 4w7c:B, 4w7d:A, 4w7f:A, 4w7r:A, 4w7r:B, 4w7r:C, 4w7r:D
6 7fac:A 524 19 0.2500 0.0153 0.4211 7.3
7 8db4:A 222 15 0.3125 0.0450 0.6667 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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