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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
>protein
GSAKLISVTKPVVEGVNTAEELIAYAARVSNPENQINNKTASGLLKYCIRHKHWSIFETAFMTLELKTSRGIAAQVLRHR
SFHFQEFSQRYASVMETPPPHQAREDDQTWWATEQEKLYAQSMELYNKALEKGIAKECARFILPLSTPTTIYMSGTIRDW
IHYIELRTSNGTQREHIDLANACKEIFIKEFPSIAKALDW

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fzb:C 207 201 1.0000 0.9662 0.9950 1.57e-150 4fzb:A, 4fzb:D, 4fzb:B, 4fzb:E, 4fzb:G, 4fzb:F, 4fzb:I, 4fzb:K, 4fzb:L, 4fzb:M, 4fzb:O, 4fzb:P
2 2cfa:A 180 199 0.8850 0.9833 0.8894 6.74e-126 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
3 6j61:A 242 171 0.2800 0.2314 0.3275 2.93e-17 6j61:B, 6j61:D, 6j61:C
4 4p5b:B 235 181 0.2650 0.2255 0.2928 3.20e-16 4p5a:A, 4p5a:B, 4p5a:C, 4p5a:D, 4p5b:A, 4p5b:C, 4p5b:D
5 2af6:G 246 199 0.2850 0.2317 0.2864 1.22e-12 2af6:A, 2af6:B, 2af6:D, 2af6:C, 2af6:E, 2af6:F, 2af6:H, 2gq2:A, 2gq2:C, 2gq2:D, 2gq2:B, 3gwc:A, 3gwc:B, 3gwc:D, 3gwc:C, 3gwc:E, 3gwc:F, 3gwc:H, 3gwc:G, 3hzg:A, 3hzg:B, 3hzg:D, 3hzg:C
6 1o26:B 221 177 0.2400 0.2172 0.2712 1.32e-11 5chp:A, 3g4a:A, 3g4a:D, 3g4a:C, 3g4a:B, 3g4c:A, 3g4c:D, 3g4c:C, 3g4c:B, 4gt9:A, 4gta:A, 4gtb:A, 4gtc:A, 4gtc:C, 4gtc:B, 4gtc:D, 4gtd:A, 4gtd:D, 4gtd:C, 4gtd:B, 4gte:A, 4gte:C, 4gte:B, 4gte:D, 4gtf:A, 4gtl:B, 4gtl:D, 4gtl:A, 4gtl:C, 5ioq:A, 5ioq:B, 5ioq:C, 5ioq:D, 5ior:A, 5ios:A, 5ios:B, 5ios:C, 5ios:D, 5iot:A, 5iot:B, 5iot:D, 5iot:C, 5jfe:A, 4kar:A, 4kar:C, 4kar:B, 4kar:D, 4kas:A, 4kas:D, 4kas:B, 4kas:C, 4kat:A, 4kat:D, 4kat:C, 4kat:B, 1kq4:A, 1kq4:C, 1kq4:D, 1kq4:B, 3n0b:A, 3n0b:D, 3n0b:C, 3n0b:B, 3n0c:A, 3n0c:D, 3n0c:C, 3n0c:B, 7ndw:A, 7ndw:C, 7ndw:D, 7ndw:B, 7ndz:A, 7ndz:C, 7ndz:D, 7ndz:B, 1o25:A, 1o25:D, 1o25:B, 1o25:C, 1o26:A, 1o26:D, 1o26:C, 1o27:A, 1o27:D, 1o27:C, 1o27:B, 1o28:A, 1o28:D, 1o28:B, 1o28:C, 1o29:A, 1o29:D, 1o29:C, 1o29:B, 1o2a:A, 1o2a:C, 1o2a:D, 1o2a:B, 1o2b:A, 1o2b:C, 1o2b:D, 1o2b:B
7 3fnn:A 227 183 0.2800 0.2467 0.3060 5.38e-11
8 3ah5:A 215 143 0.1950 0.1814 0.2727 0.009 3ah5:C, 3ah5:B, 3ah5:D, 3ah5:E, 3ah5:F, 3n3y:A, 3n3y:B, 3n3y:C, 3n3y:D
9 6rxu:UT 2033 82 0.1200 0.0118 0.2927 1.1 6rxv:UT, 6rxx:UT, 6rxz:UT
10 4yfy:A 241 68 0.1100 0.0913 0.3235 6.6 4yfy:B
11 3v8d:A 479 92 0.1050 0.0438 0.2283 7.6 3dax:A, 3dax:B, 3sn5:A, 3sn5:B, 3v8d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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