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BioLiP
>protein
GRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATV
NGHLYKTNYLTHRQ

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5abd:E 95 94 1.0000 0.9895 1.0000 3.01e-67 5abd:I, 5abd:X, 4ckv:X, 4cl7:A, 4cl7:C, 4cl7:B, 4cl7:D
2 1bih:A 391 76 0.2447 0.0588 0.3026 0.012 1bih:B
3 8edi:A 200 77 0.2128 0.1000 0.2597 0.061 8edi:B
4 6rxu:UT 2033 42 0.1489 0.0069 0.3333 0.45 6rxv:UT, 6rxx:UT, 6rxz:UT
5 6rxt:UA 839 46 0.1702 0.0191 0.3478 0.59 5oql:A, 6rxu:UA, 6rxv:UA, 6rxx:UA, 6rxy:UA, 6rxz:UA
6 6ww6:B 192 54 0.1277 0.0625 0.2222 1.7 6wsh:A, 6wsh:B, 6ww6:A
7 3ktw:B 93 48 0.1383 0.1398 0.2708 2.1 3ktw:A
8 8c00:t 619 43 0.1383 0.0210 0.3023 2.3 8c01:t, 6rbd:k, 7wtr:CC
9 6i7p:A 883 14 0.0745 0.0079 0.5000 3.4 5goz:A, 5goz:B, 5goz:C, 5gp1:A, 5gp1:B, 5gp1:C, 6i7p:B, 6i7p:C, 6i7p:D, 6i7p:E, 6i7p:F, 5kqr:A, 5kqs:A, 5m2x:A, 5m2x:B, 5m2x:C, 5m2x:D, 5m2x:E, 5m2x:F, 5m2z:A, 5m2z:C, 5m2z:B, 5m2z:D, 5m2z:E, 5m2z:F, 5m5b:A, 5m5b:B, 5mrk:A, 5mrk:B, 5nju:A, 5nju:B, 5njv:A, 5njv:B, 5njv:C, 5njv:D, 8pem:A, 5tfr:A, 5tfr:B, 5tmh:A, 5tmh:B, 5u0b:A, 5u0b:B, 5u0c:A, 5u0c:B, 5u0c:C, 5u0c:D, 5u0c:E, 5u0c:F, 5u0c:G, 5u0c:H, 5ulp:A, 5ulp:B, 6ux2:B, 5vim:A, 5vim:B, 6wcz:B, 5wxb:A, 5wz1:A, 5wz1:B, 5wz1:C, 5wz1:D, 5wz1:E, 5wz1:F, 5wz1:G, 5wz1:H, 5wz2:A, 5wz2:B, 5wz2:C
10 6ld3:A 578 14 0.0745 0.0121 0.5000 3.5 6ld1:A, 6ld2:A, 6ld4:A, 6ld5:A, 5wz3:A
11 3e3c:A 118 29 0.1170 0.0932 0.3793 4.6 3e3c:B
12 4e1k:A 450 18 0.0745 0.0156 0.3889 8.9 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
13 7d6n:D 589 27 0.1064 0.0170 0.3704 9.0 7d6n:A, 7d6n:B, 7d6n:E, 7d6n:C, 7d6n:F, 7d6n:G, 7d6n:J, 7d6n:I, 7d6n:H
14 2oi6:B 452 18 0.0745 0.0155 0.3889 9.6 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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