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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRNRGRLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGALV
NAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLLVNVLGLCLFHHGHSHGGHGHGHDRAGQLNMRGVFLHVLG
DALGSVIVVVNALVFYFSWKGCSEGDFCVNPCFPDPCKAYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQT
VPKQIDIRNLIKELRNVEGVEEVHELHVWQLAGSRIIATAHIKCEDPTSYMEVAKTIKDVFHNHGIHATTIQPEF

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8zsz:A 315 315 1.0000 1.0000 1.0000 0.0 8zsb:A, 8zsb:B, 8zsz:B
2 8j80:B 288 316 0.2603 0.2847 0.2595 2.03e-28 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
3 6xpd:B 303 315 0.2476 0.2574 0.2476 3.15e-26 6xpd:A, 6xpe:B, 6xpe:A
4 7y5g:B 302 312 0.2635 0.2748 0.2660 1.23e-25 7y5g:A, 7y5h:B, 7y5h:A
5 6vd8:A 85 77 0.0794 0.2941 0.3247 1.74e-04 6vd8:B
6 2qfi:A 286 102 0.0857 0.0944 0.2647 4.37e-04 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
7 2qfi:A 286 115 0.0921 0.1014 0.2522 3.3 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
8 4obw:D 235 59 0.0508 0.0681 0.2712 1.8 4obw:A, 4obw:C, 4obw:B
9 1cv8:A 173 62 0.0698 0.1272 0.3548 2.0
10 4ejx:A 1034 33 0.0381 0.0116 0.3636 2.1 4enz:A, 2j5w:A, 1kcw:A
11 8iqi:C 916 70 0.0635 0.0218 0.2857 2.7 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
12 7thn:B 478 120 0.0921 0.0607 0.2417 4.3
13 8p4x:A 526 54 0.0444 0.0266 0.2593 5.4 8p4x:B
14 3ab1:B 336 68 0.0635 0.0595 0.2941 6.9 3ab1:A
15 7wli:A 1135 80 0.0730 0.0203 0.2875 8.2 7wlj:A, 7wlk:A, 7wll:A
16 4bnr:J 58 14 0.0254 0.1379 0.5714 8.2 1bhc:J, 4bnr:I, 1bpi:A, 1bz5:A, 2fi3:I, 2fi4:I, 2fi5:I, 3fp7:J, 2ftl:I, 2ftm:B, 3ldj:B, 3ldj:C, 6pti:A, 1qlq:A
17 9f14:A 324 50 0.0476 0.0463 0.3000 9.9 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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