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BioLiP
>protein
GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
P

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5i22:A 81 81 1.0000 1.0000 1.0000 2.75e-57 1mv0:B
2 4wci:C 63 75 0.2963 0.3810 0.3200 6.55e-07 2j6f:A, 2j6o:A, 2j7i:A, 2j7i:B, 4wci:A, 4wci:E
3 6f55:A 67 69 0.2840 0.3433 0.3333 4.32e-06
4 6a9c:B 66 69 0.2593 0.3182 0.3043 3.85e-05
5 2xmf:A 60 69 0.2469 0.3333 0.2899 2.07e-04
6 5xhz:A 60 70 0.2716 0.3667 0.3143 6.23e-04 5xhz:B
7 1gbr:A 74 67 0.2716 0.2973 0.3284 0.001
8 4f14:A 56 67 0.2346 0.3393 0.2836 0.001
9 2sem:B 59 65 0.2469 0.3390 0.3077 0.002 1sem:A, 1sem:B, 2sem:A, 3sem:A, 3sem:B
10 8dgo:B 218 67 0.2716 0.1009 0.3284 0.003 2aoa:A, 2aoa:B, 2aob:A, 2aob:B, 2aob:C, 2aob:D, 1aze:A, 1bm2:A, 1bmb:A, 3c7i:A, 5cdw:B, 5cdw:K, 5cdw:O, 5cdw:Y, 5cdw:d, 5cdw:Z, 5cdw:V, 5cdw:P, 5cdw:L, 5cdw:H, 5cdw:C, 5cdw:E, 5cdw:U, 5cdw:c, 5cdw:A, 5cdw:G, 1cj1:A, 1cj1:B, 1cj1:C, 1cj1:D, 1cj1:E, 1cj1:F, 1cj1:G, 1cj1:H, 1cj1:I, 1cj1:J, 1cj1:K, 1cj1:L, 1fyr:A, 1fyr:B, 1fyr:C, 1fyr:D, 1gbq:A, 2gbq:A, 3gbq:A, 4gbq:A, 2h5k:A, 2huw:A, 2huw:B, 3imd:A, 3imd:B, 3imj:A, 3imj:B, 3in7:A, 3in7:C, 3in8:A, 1io6:A, 1jyq:A, 1jyq:B, 1jyr:A, 3kfj:A, 7mph:A, 7mph:B, 7mph:C, 7mph:D, 7mph:E, 7mph:F, 3mxc:A, 3mxy:A, 3n7y:A, 3n7y:B, 3n7y:C, 3n84:A, 3n84:B, 3n84:C, 3n84:D, 3n84:E, 3n84:F, 3n8m:A, 3ov1:A, 3ove:A, 4p9v:A, 4p9z:A, 1qg1:E, 3s8l:A, 3s8n:A, 3s8o:A, 1tze:E, 2vwf:A, 2w0z:A, 3wa4:A, 6wm1:A, 6wm1:C, 6wo2:A, 6wo2:B, 1x0n:A, 1zfp:E
11 2bz8:B 57 70 0.2593 0.3684 0.3000 0.003 2bz8:A
12 4x1v:A 59 69 0.2469 0.3390 0.2899 0.006 3u23:A
13 2drk:A 59 70 0.2593 0.3559 0.3000 0.007 2drm:A, 2drm:B, 2drm:C, 2drm:D
14 2w10:B 62 72 0.2716 0.3548 0.3056 0.007 2d0n:A, 2d0n:C, 1h3h:A, 1oeb:B, 1oeb:A, 1uti:A, 2w10:A
15 5ixf:A 68 66 0.2222 0.2647 0.2727 0.013
16 6pbc:A 1070 72 0.2963 0.0224 0.3333 0.015
17 7z3j:A 1119 72 0.2963 0.0214 0.3333 0.015 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
18 1w70:A 60 67 0.2222 0.3000 0.2687 0.027 1w70:B
19 8hlo:A 67 69 0.2469 0.2985 0.2899 0.20 2rqu:A
20 1zsg:A 65 68 0.2346 0.2923 0.2794 0.31 2p4r:A, 5sxp:B, 5sxp:D, 5sxp:A, 5sxp:C
21 2lcs:A 67 69 0.2099 0.2537 0.2464 0.58
22 1wlp:B 138 72 0.2469 0.1449 0.2778 0.59 1ov3:A, 1ov3:B, 7yxw:A
23 2ak5:B 64 68 0.2099 0.2656 0.2500 1.00 2df6:A, 2df6:B
24 3i5r:A 81 80 0.2346 0.2346 0.2375 1.2
25 1qcf:A 450 73 0.2716 0.0489 0.3014 2.3 1ad5:B, 1ad5:A, 2c0i:A, 2c0i:B, 2c0o:A, 2c0o:B, 2c0t:A, 2c0t:B, 5h09:A, 5h0b:A, 5h0e:A, 5h0g:A, 5h0h:A, 2hck:B, 2hck:A, 2hk5:A, 3vry:A, 3vry:B, 3vrz:A, 3vrz:B, 3vs0:A, 3vs0:B, 3vs1:B, 3vs2:A, 3vs2:B, 3vs3:A, 3vs3:B, 3vs4:B, 3vs4:A, 3vs5:A, 3vs5:B, 3vs6:A, 3vs6:B, 3vs7:A, 5zj6:A, 5zj6:B
26 2oi3:A 86 68 0.2346 0.2209 0.2794 2.6 2oj2:A
27 3vs7:B 427 68 0.2593 0.0492 0.3088 3.5 4lud:B, 4lud:A, 4lue:B, 4lue:A, 3vs1:A
28 8t7c:A 1001 68 0.2222 0.0180 0.2647 5.4
29 6dtd:A 1053 25 0.1605 0.0123 0.5200 5.6
30 4f0l:B 449 69 0.2222 0.0401 0.2609 5.8 4f0l:A
31 2iag:A 471 47 0.1728 0.0297 0.2979 6.1 3b6h:A, 3b6h:B, 2iag:B
32 1zuk:A 65 71 0.2222 0.2769 0.2535 8.5 1zuk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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