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BioLiP
>protein
GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYSEPHESRTN
TDILETLKRRE

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1n6j:A 93 90 0.9231 0.9032 0.9333 1.96e-60 6byy:A, 6byy:B, 6byy:C, 6bz1:C, 6bz1:A, 6bz1:B, 1n6j:B, 1tqe:P, 1tqe:Q, 1tqe:R, 1tqe:S, 6wc2:I, 6wc2:J, 6wc2:D, 6wc2:A, 6wc2:B, 6wc5:A, 6wc5:B, 6wc5:C, 6wc5:D
2 8c84:B 93 90 0.8901 0.8710 0.9000 2.09e-57 6byy:D, 6bz1:D, 1c7u:A, 1c7u:B, 8c84:A, 1egw:A, 1egw:B, 1egw:C, 1egw:D, 3kov:B, 3kov:A, 3kov:I, 3kov:J, 3mu6:A, 3mu6:B, 3mu6:D, 3mu6:C, 3p57:A, 3p57:B, 3p57:C, 3p57:D, 3p57:I, 3p57:J, 8pde:D, 8pde:E, 8pde:A, 8pde:B, 8q9n:A, 8q9n:B, 8q9p:B, 8q9p:A, 8q9q:A, 8q9q:B, 8q9r:A, 8q9r:B, 8q9r:E, 8q9r:F, 6wc2:C, 7x1n:A, 7x1n:D, 7x1n:B, 7x1n:C, 7xuz:D, 7xuz:C, 7xuz:H, 7xuz:G
3 1mnm:A 85 64 0.2527 0.2706 0.3594 2.90e-11 1mnm:B
4 1hbx:E 89 65 0.2527 0.2584 0.3538 1.46e-09 1hbx:A, 1hbx:B, 1hbx:D, 1k6o:B, 1k6o:C, 1srs:A, 1srs:B
5 6sc2:B 3930 22 0.0989 0.0023 0.4091 2.6 6rla:A, 6rla:B, 6sc2:A
6 6v7w:E 234 23 0.0989 0.0385 0.3913 4.9 6d6a:A, 6d6a:B, 6d6a:C, 6d6a:D, 6d6a:E, 6d6a:F, 6d6a:G, 6d6a:H, 6d6b:A, 6d6b:B, 6d6b:C, 6d6b:D, 6d6b:E, 6d6b:F, 6d6b:G, 6d6b:H, 6d6c:A, 6d6c:B, 6d6c:C, 6d6c:D, 6d6c:E, 6d6c:F, 6d6c:G, 6d6c:H, 6d6c:I, 6d6c:J, 6d6c:K, 6d6c:L, 6d6d:A, 6d6d:B, 6d6l:A, 6d6l:B, 6d6l:C, 6d6l:D, 6d6m:A, 6d6m:B, 6d6m:C, 6d6m:D, 6d6n:A, 6d6n:B, 6d6n:C, 6d6n:D, 6d6o:A, 6d6o:B, 6d6o:C, 6d6o:D, 6d6p:A, 6d6p:B, 6d6p:C, 6d6p:D, 3ix3:A, 3ix3:B, 3ix4:A, 3ix4:B, 3ix4:C, 3ix4:D, 3ix4:E, 3ix4:F, 3ix4:G, 3ix4:H, 3ix8:A, 3ix8:B, 3ix8:C, 3ix8:D, 3jpu:A, 3jpu:B, 3jpu:C, 3jpu:D, 3jpu:E, 6mvm:A, 6mvm:B, 6mvn:A, 6mvn:B, 6mwh:A, 6mwh:B, 6mwl:A, 6mwl:B, 6mww:A, 6mww:B, 6mwz:A, 6mwz:B, 4ng2:A, 4ng2:B, 4ng2:C, 4ng2:D, 2uv0:E, 2uv0:F, 2uv0:G, 2uv0:H, 6v7w:B, 6v7x:B
7 6hn5:F 323 21 0.0989 0.0279 0.4286 5.8
8 4iug:A 957 44 0.1648 0.0157 0.3409 5.8
9 6can:A 616 67 0.2088 0.0308 0.2836 7.2 6can:B, 5t88:A, 5t88:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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