Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
>protein
GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c84:B 93 74 0.9324 0.7419 0.9324 1.36e-46 6byy:D, 6bz1:D, 1c7u:A, 1c7u:B, 8c84:A, 1egw:A, 1egw:B, 1egw:C, 1egw:D, 3kov:B, 3kov:A, 3kov:I, 3kov:J, 3mu6:A, 3mu6:B, 3mu6:D, 3mu6:C, 3p57:A, 3p57:B, 3p57:C, 3p57:D, 3p57:I, 3p57:J, 8pde:D, 8pde:E, 8pde:A, 8pde:B, 8q9n:A, 8q9n:B, 8q9p:B, 8q9p:A, 8q9q:A, 8q9q:B, 8q9r:A, 8q9r:B, 8q9r:E, 8q9r:F, 6wc2:C, 7x1n:A, 7x1n:D, 7x1n:B, 7x1n:C, 7xuz:D, 7xuz:C, 7xuz:H, 7xuz:G
2 1n6j:A 93 74 0.8784 0.6989 0.8784 1.16e-45 6byy:A, 6byy:B, 6byy:C, 6bz1:C, 6bz1:A, 6bz1:B, 1n6j:B, 1tqe:P, 1tqe:Q, 1tqe:R, 1tqe:S, 6wc2:I, 6wc2:J, 6wc2:D, 6wc2:A, 6wc2:B, 6wc5:A, 6wc5:B, 6wc5:C, 6wc5:D
3 1mnm:A 85 64 0.3108 0.2706 0.3594 1.17e-11 1mnm:B
4 1hbx:E 89 65 0.3108 0.2584 0.3538 8.34e-10 1hbx:A, 1hbx:B, 1hbx:D, 1k6o:B, 1k6o:C, 1srs:A, 1srs:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417