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BioLiP
>protein
GRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKPESKYFLTRNSSTIIAFAVGGQYVPGN
GFSLIGAHTDSPCLRVKRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVEQRLVHVDRPILRIPHLAIHLMEMHLVP
ILATSIQEELEKSVLTSLLCAHLGLSPEDILEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCSAPAS
LAADPHVRMIALYDNEEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLRPLFHKGPV
IKVNSKQRYASNAVSEALIREVASSVGVPLQDLTTIGPILASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGF
FELFPSLSRSLLVD

The query sequence (length=414) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vat:A 458 458 1.0000 0.9039 0.9039 0.0 4dyo:A
2 7u5h:A 422 423 0.9783 0.9597 0.9574 0.0 7u5h:B, 7u5h:C, 7u5h:D, 7u5h:E, 7u5h:F, 7u5h:G, 7u5h:H, 7u5h:I, 7u5h:J, 7u5h:K, 7u5h:L, 3var:A
3 7dde:A 525 464 0.4879 0.3848 0.4353 1.71e-121 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
4 4njr:A 425 422 0.4058 0.3953 0.3981 4.93e-89 4njq:A, 4njq:B, 4njq:C, 4njq:D, 4njr:B, 4njr:C, 4njr:D, 4oiw:A, 4oiw:B, 4oiw:C, 4oiw:D, 4oiw:E, 4oiw:F, 3wt4:A, 3wt4:B, 3wt4:C, 3wt4:D
5 5jm6:A 445 438 0.3623 0.3371 0.3425 1.35e-76 5jm6:E, 5jm6:F, 5jm6:B, 5jm6:C, 5jm6:D
6 6pev:A 478 467 0.3551 0.3075 0.3148 7.52e-71 4eme:A, 4eme:B, 4eme:C, 4eme:D, 6pev:B, 6pev:C, 6pev:D, 6pev:E, 6pev:F, 6pev:G, 6pev:H, 6pev:I, 6pev:J, 6pev:K, 6pev:L
7 5jh9:B 477 452 0.3285 0.2851 0.3009 6.57e-55 5jgf:A, 5jgf:B, 5jgf:C, 5jgf:D, 5jh9:A, 5jh9:C, 5jh9:D
8 2glf:A 450 451 0.2609 0.2400 0.2395 3.32e-15 2glf:B, 2glf:C, 2glf:D
9 2glj:A 456 448 0.2440 0.2215 0.2254 3.45e-12 2glj:B, 2glj:C, 2glj:D, 2glj:E, 2glj:F, 2glj:G, 2glj:H, 2glj:I, 2glj:J, 2glj:K, 2glj:L, 2glj:M, 2glj:N, 2glj:O, 2glj:P, 2glj:Q, 2glj:R, 2glj:S, 2glj:T, 2glj:U, 2glj:V, 2glj:W, 2glj:X
10 1qpa:B 344 45 0.0411 0.0494 0.3778 2.9 1qpa:A
11 7wpt:A 483 40 0.0338 0.0290 0.3500 5.6 7wpn:A
12 8jzd:A 166 49 0.0362 0.0904 0.3061 6.2 8jzd:C
13 6mjg:A 386 46 0.0362 0.0389 0.3261 7.2 6mjf:A, 6mjf:B, 6mjf:C, 6mjf:D, 6mjf:F
14 5yzg:s 374 35 0.0290 0.0321 0.3429 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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