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BioLiP
>protein
GPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xx5:U 78 73 1.0000 0.9359 1.0000 2.39e-45 8h0v:u, 8h0w:u, 8h1t:K, 7k5y:U, 7pet:u, 7pet:s, 7peu:u, 7pex:u, 7pez:s, 7pf0:u, 7pf0:U, 7pf2:U, 7pf3:s, 7pf5:u, 7pf6:U, 7pfa:U, 7pfa:u, 7pfc:U, 7pfd:U, 7pfe:u, 7pft:U, 7pft:u, 7pft:S, 7pfu:U, 7pfu:S, 7pfv:U, 7pfw:u, 7pfx:S, 8vg2:U
2 6lab:V 109 73 0.4658 0.3119 0.4658 5.24e-13 8aag:Z, 7cow:S, 7cow:T, 7dbp:K, 7k5x:U, 6la2:S, 6la2:T, 6la8:S, 6la9:S, 6la9:T, 6lab:U, 5nl0:Z, 8tb9:A, 7xvl:o, 7xx6:o, 7xx6:p
3 7xx7:U 213 70 0.3836 0.1315 0.4000 1.10e-09 7k60:U, 7k63:U, 6l9z:S, 8yti:U
4 8xjv:Aq 190 73 0.4384 0.1684 0.4384 1.74e-09 4qlc:U, 5wcu:U, 5wcu:V, 8xjv:Ah, 8xjv:Ai, 8xjv:Aj, 8xjv:Ak, 8xjv:Al, 8xjv:Am, 8xjv:An, 8xjv:Ao, 8xjv:Ap, 8xjv:Ar, 8xjv:As, 7xvm:U, 7xvm:V
5 7kbf:K 78 79 0.3151 0.2949 0.2911 0.002
6 5ae6:B 767 43 0.1918 0.0183 0.3256 0.83 5a7m:A, 5a7m:B, 5ae6:A
7 5wew:B 141 51 0.1781 0.0922 0.2549 6.2 6c3u:A, 6c3u:B, 6c3u:C, 6c3u:D, 8r37:B, 8r37:A, 5v3d:A, 5v3d:B, 5v91:A, 5v91:B, 5wew:A, 5wew:C, 5wew:D, 5wew:F, 5wew:G, 5wew:H
8 2ymv:A 327 19 0.1644 0.0367 0.6316 6.2
9 7lgu:A 680 60 0.2603 0.0279 0.3167 8.1 7lgu:B, 7lgw:A, 7lgw:B, 7lh2:A, 7lh2:B
10 3avt:A 1203 34 0.1644 0.0100 0.3529 8.6 7abz:6, 5afi:z, 3agp:A, 3agq:A, 3avu:A, 3avv:A, 3avw:A, 3avx:A, 3avy:A, 7bbn:A, 7bbn:B, 2bvn:A, 2bvn:B, 1efm:A, 1etu:A, 4fwt:A, 2hcj:A, 2hcj:B, 2hdn:A, 2hdn:B, 2hdn:C, 2hdn:D, 2hdn:E, 2hdn:F, 2hdn:G, 2hdn:H, 2hdn:I, 2hdn:J, 2hdn:K, 2hdn:L, 5i4r:C, 5i4r:D, 5i4r:G, 5i4r:H, 3mmp:G, 5opd:A, 5opd:B, 4pc2:A, 4pc2:B, 4pc3:A, 4pc3:B, 4pc6:A, 4pc6:B, 4pc7:A, 3u6b:B, 3u6b:A, 3vnu:A, 3vnv:A, 6wd4:8, 6wd7:8, 6wd9:8, 6wda:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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