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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPPSGKTYMGWWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY
SKAGREELERVNV

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e7s:H 93 93 1.0000 1.0000 1.0000 8.51e-66 8e7s:h
2 7o3e:R 72 62 0.1935 0.2500 0.2903 0.020
3 8boz:A 541 63 0.2043 0.0351 0.3016 0.93 8boz:C, 8boz:M, 8boz:O
4 8boz:G 558 63 0.2043 0.0341 0.3016 0.94 8boz:E, 8boz:I, 8boz:K
5 8e9h:F 436 36 0.1290 0.0275 0.3333 2.8 8e9g:F, 8e9i:F
6 4uau:A 226 28 0.1075 0.0442 0.3571 3.5 4uas:A, 4uas:B, 4uat:A, 4uat:B, 4uau:B
7 8upk:A 739 43 0.1720 0.0217 0.3721 5.5 8uph:A, 8uph:B, 8upk:B, 8upm:A, 8upm:B
8 1op0:A 234 44 0.1828 0.0726 0.3864 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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