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BioLiP
>protein
GPPGPPGPPGPPGPRGRTGPPGPPGPPGPP

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2f6a:H 30 30 1.0000 1.0000 1.0000 1.77e-07 2f6a:I
2 6x3m:F 366 27 0.5000 0.0410 0.5556 0.002 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
3 6x3m:F 366 28 0.5333 0.0437 0.5714 0.002 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
4 8tw0:A 30 28 0.6667 0.6667 0.7143 0.13
5 6sc2:B 3930 19 0.3333 0.0025 0.5263 2.9 6rla:A, 6rla:B, 6sc2:A
6 4rh7:A 3005 19 0.3333 0.0033 0.5263 2.9
7 7w02:A 1566 17 0.3333 0.0064 0.5882 8.3
8 3wkg:A 410 16 0.3000 0.0220 0.5625 8.5 3wkh:A, 3wki:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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