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I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred TCRfinder

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSAN

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2djy:A 42 37 1.0000 0.8810 1.0000 1.20e-22
2 2kxq:A 90 37 1.0000 0.4111 1.0000 3.23e-22 2laz:A, 2lb0:A, 2ltz:A
3 2lb1:A 35 34 0.7838 0.8286 0.8529 1.13e-18 2ltx:A
4 2jmf:A 43 36 0.6757 0.5814 0.6944 8.90e-13
5 5dws:C 40 33 0.6216 0.5750 0.6970 1.79e-12
6 5cq2:A 76 33 0.6216 0.3026 0.6970 5.17e-12 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
7 5cq2:A 76 32 0.5676 0.2763 0.6562 2.85e-09 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
8 4lcd:A 419 34 0.6486 0.0573 0.7059 1.80e-11 4lcd:B
9 1i5h:W 50 35 0.5405 0.4000 0.5714 5.87e-11
10 2m3o:W 43 35 0.5135 0.4419 0.5429 1.43e-09 2kpz:A, 2kq0:A, 2mpt:A, 4n7h:A
11 2ltv:A 36 35 0.4865 0.5000 0.5143 1.57e-09 2law:A
12 6jjz:B 96 34 0.5135 0.1979 0.5588 1.68e-09 6jjz:A, 6kkg:A, 6kkg:B
13 6jjz:B 96 34 0.4595 0.1771 0.5000 7.89e-05 6jjz:A, 6kkg:A, 6kkg:B
14 7lp3:A 37 33 0.5405 0.5405 0.6061 3.89e-09 7lp3:C
15 2laj:A 40 33 0.5135 0.4750 0.5758 4.01e-09
16 6jjy:A 128 32 0.4865 0.1406 0.5625 1.49e-08 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
17 6jjy:A 128 32 0.4324 0.1250 0.5000 6.18e-05 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
18 7lp2:E 37 30 0.5135 0.5135 0.6333 2.06e-08 2lb2:A, 7lp2:A, 7lp2:C, 2lty:A
19 2n8t:A 39 32 0.4324 0.4103 0.5000 4.23e-08
20 1jmq:A 46 32 0.4324 0.3478 0.5000 2.57e-07 1k5r:A, 1k9q:A, 1k9r:A, 2lax:A, 2lay:A, 2ltw:A
21 2ez5:W 46 32 0.4054 0.3261 0.4688 1.77e-06
22 2nc3:A 33 30 0.4054 0.4545 0.5000 2.21e-05 2nc4:A, 2nc5:A, 2nc6:A
23 8sg2:A 163 31 0.3784 0.0859 0.4516 8.93e-04 6dun:A, 6dun:B, 7efj:A, 7efx:A, 7ekv:A, 7f0m:A, 7f0m:C, 7f0m:B, 7f0m:D, 1f8a:B, 4gwv:A, 3i6c:A, 3i6c:B, 1i8g:B, 1i8h:B, 3ikd:A, 3ikd:B, 3ikg:A, 3ikg:B, 9inr:A, 9inr:B, 2itk:A, 3jyj:A, 3jyj:B, 3kab:A, 3kac:A, 3kac:B, 3kad:A, 3kaf:A, 3kag:A, 3kah:A, 3kai:A, 3kce:A, 2lb3:A, 2n1o:A, 1nmw:A, 3ntp:A, 6o33:A, 6o34:A, 3odk:A, 3oob:A, 1pin:A, 2q5a:A, 3tc5:A, 3tcz:A, 3tdb:A, 4tns:A, 4tyo:A, 4tyo:B, 5uy9:A, 6vaj:A, 3wh0:A, 2xp3:A, 2xp4:A, 2xp5:A, 2xp6:A, 2xp7:A, 2xp8:A, 2xp9:A, 2xpa:A, 2xpb:A
24 6zj3:SE 265 20 0.2703 0.0377 0.5000 0.36
25 4v6w:AE 261 25 0.2703 0.0383 0.4000 0.72 6xu6:AE, 6xu7:AE, 6xu8:AE
26 8c3a:CR 260 23 0.2703 0.0385 0.4348 1.0 8c3a:G, 8cq7:G, 8cq7:CR, 8cqw:G, 8cqw:CR, 8cre:G, 8cre:CR, 8oeq:G, 8oeq:CR, 7pzy:F, 7q08:F, 7q0f:F, 7q0p:F, 7q0r:F, 8q5i:F
27 3fmt:A 162 29 0.3243 0.0741 0.4138 1.4 3fmt:B, 3fmt:E, 3fmt:F, 1iu3:C, 1iu3:F, 1j3e:A, 1lrr:A, 1lrr:D
28 8bn3:S4 260 23 0.2432 0.0346 0.3913 1.9 7a1g:S, 7ajt:DE, 7aju:DE, 7b7d:S, 8bqd:S, 8bqx:S, 8c00:S, 8c01:S, 8c83:S, 8cah:S, 8cas:S, 8cbj:E, 8ccs:h, 8cdl:h, 8cdr:h, 8ceh:h, 8cf5:h, 8cg8:h, 8cgn:h, 8civ:h, 8cku:h, 8cmj:h, 7d4i:SF, 7d5t:SF, 7d63:SF, 5dat:S4, 5dat:s4, 5dc3:S4, 5dc3:s4, 5dge:S4, 5dge:s4, 5dgf:S4, 5dgf:s4, 5dgv:S4, 5dgv:s4, 6eml:S, 8eub:BE, 8evp:BE, 8evq:BE, 8evr:BE, 8evs:BE, 8evt:BE, 8ewb:BE, 8ewc:BE, 6fai:E, 5fci:S4, 5fci:s4, 5fcj:S4, 5fcj:s4, 6fyx:E, 6fyy:E, 6gq1:u, 6gqb:u, 6gqv:u, 6gsm:E, 6gsn:E, 6hhq:F, 6hhq:s4, 5i4l:S4, 5i4l:s4, 6i7o:Sb, 6i7o:S, 8i7j:E, 5it7:E, 5it9:E, 3j6x:S4, 3j6y:S4, 3j77:S4, 3j78:S4, 3j80:E, 3j81:E, 3jam:E, 3jap:E, 5juo:BB, 5jup:BB, 5jus:BB, 5jut:BB, 5juu:BB, 8k2d:SE, 8k82:SE, 6ke6:SF, 5ll6:S, 6lqp:SF, 6lqq:SF, 6lqr:SF, 6lqs:SF, 6lqt:SF, 6lqu:SF, 6lqv:SF, 5lyb:S4, 5lyb:s4, 5m1j:E2, 5mc6:S, 5mei:s4, 5mei:F, 7mpi:BE, 7mpj:BE, 7n8b:BE, 5ndg:S4, 5ndg:s4, 5ndv:S4, 5ndv:s4, 5ndw:S4, 5ndw:s4, 7nrc:SS, 7nrd:SS, 5obm:S4, 5obm:s4, 5on6:s4, 5on6:F, 7osa:eS4, 7osm:eS4, 6q8y:S, 6rbd:E, 6rbe:E, 7rr5:SE, 8rw1:E, 6s47:BF, 8s8d:E, 8s8e:E, 8s8f:E, 8s8g:E, 8s8h:E, 8s8i:E, 8s8j:E, 6snt:E, 7suk:L4, 6sv4:Sb, 6sv4:S, 6sv4:Sc, 6t4q:SE, 6t7i:SE, 6t7t:SE, 6t83:Eb, 6t83:f, 5tbw:F, 5tbw:s4, 6tb3:S, 5tga:S4, 5tga:s4, 5tgm:S4, 5tgm:s4, 6tnu:S, 5tzs:5, 4u3m:S4, 4u3m:s4, 4u3n:S4, 4u3n:s4, 4u3u:S4, 4u3u:s4, 4u4n:S4, 4u4n:s4, 4u4o:S4, 4u4o:s4, 4u4q:S4, 4u4q:s4, 4u4r:S4, 4u4r:s4, 4u4u:S4, 4u4u:s4, 4u4y:S4, 4u4y:s4, 4u4z:S4, 4u4z:s4, 4u50:S4, 4u50:s4, 4u51:S4, 4u51:s4, 4u52:S4, 4u52:s4, 4u53:S4, 4u53:s4, 4u55:S4, 4u55:s4, 4u56:S4, 4u56:s4, 4u6f:S4, 4u6f:s4, 4uer:W, 6uz7:E, 4v6i:AD, 4v88:AE, 4v88:CE, 4v8y:AE, 4v8z:AE, 4v92:BE, 6wdr:E, 5wlc:L4, 6woo:EE, 7wtl:SE, 7wtm:SE, 7wtn:SE, 7wto:SE, 7wtp:SE, 7wtq:SE, 7wtr:SE, 5wyj:SF, 5wyk:SF, 6xiq:u, 6xir:u, 8y0u:SE, 6y7c:E, 6z6j:SE, 6z6k:SE, 6zce:F, 7zpq:AE, 6zqb:DE, 6zqc:DE, 6zqd:DE, 6zqe:DE, 6zqf:DE, 6zqg:DE, 7zrs:AE, 6zu9:S, 7zuw:AE, 7zux:DE, 6zvi:m, 7zw0:sS
29 5m11:A 748 17 0.2162 0.0107 0.4706 2.2
30 5ydl:A 408 25 0.2703 0.0245 0.4000 3.1 5ydm:A
31 1ups:A 402 26 0.2432 0.0224 0.3462 3.6 1ups:B
32 5dv4:A 344 15 0.2162 0.0233 0.5333 4.5 5dv2:A, 3ngn:A, 3ngo:A, 3ngq:A
33 5wde:A 320 16 0.2162 0.0250 0.5000 5.4
34 8que:A 486 18 0.2703 0.0206 0.5556 6.2
35 8olb:h 277 32 0.3243 0.0433 0.3750 8.3 8bp8:D, 8bp8:E, 8bp8:F, 8bp8:G, 8bp8:H, 8bp8:I, 8bp8:J, 8bp8:K, 8bp8:L, 8bp8:M, 8bp8:N, 8bp8:O, 8bp8:P, 3gzt:B, 3gzt:F, 3gzt:G, 3gzt:H, 3gzt:I, 3gzt:J, 3gzt:K, 3gzt:L, 3gzt:M, 3gzt:N, 3gzt:O, 3gzt:P, 3gzt:Q, 8olb:c, 8olb:d, 8olb:e, 8olb:f, 8olb:g, 8olb:i, 8olb:j, 8olb:k, 8olb:l, 8olb:m, 8olb:n, 8olb:o, 8olc:c, 8olc:d, 8olc:e, 8olc:f, 8olc:g, 8olc:h, 8olc:i, 8olc:j, 8olc:k, 8olc:l, 8olc:m, 8olc:n, 8uk2:f, 8uk2:g, 8uk2:h, 8uk2:i, 8uk2:j, 8uk2:k, 8uk2:l, 8uk2:m, 8uk2:n, 8uk2:o, 8uk2:p, 8uk2:q, 8uk2:r, 8uk2:a, 8uk2:b, 8uk2:c, 8uk2:d, 8uk2:e, 8uk3:f, 8uk3:g, 8uk3:h, 8uk3:i, 8uk3:j, 8uk3:k, 8uk3:l, 8uk3:m, 8uk3:n, 8uk3:o, 8uk3:p, 8uk3:q, 8uk3:r, 8uk3:a, 8uk3:b, 8uk3:c, 8uk3:d, 8uk3:e, 6wxe:a, 6wxe:b, 6wxe:c, 6wxe:d, 6wxe:e, 6wxe:f, 6wxe:g, 6wxe:h, 6wxe:i, 6wxe:j, 6wxe:k, 6wxe:l, 6wxe:m, 6wxe:n, 6wxe:o, 6wxe:p, 6wxe:q, 6wxe:r, 6wxf:a, 6wxf:b, 6wxf:c, 6wxf:d, 6wxf:e, 6wxf:f, 6wxf:g, 6wxf:h, 6wxf:i, 6wxf:j, 6wxf:k, 6wxf:l, 6wxf:m, 6wxf:n, 6wxf:o, 6wxf:p, 6wxf:q, 6wxf:r, 6wxg:a, 6wxg:c, 6wxg:b, 6wxg:d, 6wxg:f, 6wxg:e, 6wxg:g, 6wxg:i, 6wxg:h, 6wxg:j, 6wxg:l, 6wxg:k, 6wxg:m, 6wxg:o, 6wxg:n, 6wxg:p, 6wxg:r, 6wxg:q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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