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BioLiP
>protein
GPLGSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ff5:A 54 54 1.0000 1.0000 1.0000 5.50e-34 3ff5:B
2 4bxu:A 69 46 0.8333 0.6522 0.9783 3.58e-27 2w84:A, 2w85:A
3 6s6r:A 69 45 0.4074 0.3188 0.4889 9.44e-09 5l87:A, 5l8a:A, 5l8a:B, 5l8a:C, 5l8a:D, 5n8v:A, 5n8v:B, 5n8v:D, 5n8v:F, 5oml:A, 5oml:D, 5oml:B, 5oml:C, 6rt2:A, 6rt2:D, 6rt2:B, 6rt2:C, 6s7m:A, 6s7m:B, 6s7m:C, 6s7m:D, 6s7m:H, 6s7m:E, 6spt:A
4 7qrc:B 61 42 0.3704 0.3279 0.4762 2.21e-08 7qrc:A
5 3duf:A 365 29 0.2407 0.0356 0.4483 0.49 3duf:C, 3duf:E, 3duf:G, 3dv0:A, 3dv0:C, 3dv0:G, 3dva:A, 3dva:C, 3dva:E, 3dva:G, 1w85:A, 1w85:C, 1w85:E, 1w85:G
6 5wno:A 302 27 0.2037 0.0364 0.4074 1.1
7 4g2d:A 314 19 0.1667 0.0287 0.4737 1.8 4ker:A, 4ker:B, 4ker:C, 4ker:D, 4kes:A, 4kes:B, 4kes:C, 4kes:D, 4ket:A, 4ket:B, 4ket:C, 4ket:D, 4keu:A, 4keu:B, 4keu:C, 4keu:D, 4kev:A, 4kev:B, 4kev:C, 4kev:D, 4kez:A, 4kez:B, 4kez:C, 4kez:D, 4kf1:A, 4kf1:B, 4kf1:C, 4kf1:D, 8sf2:D, 8sfa:D, 8sfa:S, 8sfa:b, 8sfa:t
8 4z8a:A 75 12 0.1667 0.1200 0.7500 2.9
9 3k2h:A 503 27 0.2778 0.0298 0.5556 3.5 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
10 3zjh:B 193 22 0.1852 0.0518 0.4545 3.9 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B
11 1o4s:B 384 27 0.2037 0.0286 0.4074 5.5 1o4s:A
12 3ecq:B 1347 42 0.2593 0.0104 0.3333 7.9 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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