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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPLGSPEFPGLDTQIFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEG

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4x3h:A 79 79 1.0000 1.0000 1.0000 4.17e-54 8qf5:H, 6tno:A, 6tno:C, 6tno:E, 6tnq:A, 6tnq:C, 6tnq:E, 6tq0:A, 6tq0:C, 6tq0:E, 6tq0:G, 6tq0:I, 6tq0:K, 6tq0:M, 6tq0:O, 4x3i:A
2 4mhl:A 161 35 0.1646 0.0807 0.3714 0.39
3 6due:A 737 47 0.2025 0.0217 0.3404 1.2
4 8hj4:C 130 39 0.2025 0.1231 0.4103 1.4
5 1okg:A 362 25 0.1392 0.0304 0.4400 2.1
6 8cls:A 837 21 0.1139 0.0108 0.4286 2.3
7 8cls:B 853 21 0.1139 0.0106 0.4286 2.4
8 6sl1:A 2652 58 0.2152 0.0064 0.2931 2.9 6sky:A, 6sky:B
9 6et5:3 58 47 0.1772 0.2414 0.2979 4.4 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
10 2yv5:A 293 27 0.1139 0.0307 0.3333 5.2
11 6iq5:A 459 66 0.3038 0.0523 0.3636 5.2 3pm0:A
12 7oik:A 4426 23 0.1139 0.0020 0.3913 5.4 7oim:A, 6tax:A, 6tay:A
13 5zmw:A 1000 14 0.1139 0.0090 0.6429 5.7 5a3q:A, 5a3r:A, 5a3s:A, 5a3s:B, 2agv:A, 2agv:B, 3ar2:A, 3ar3:A, 3ar4:A, 3ar5:A, 3ar6:A, 3ar7:A, 3ar8:A, 3ar9:A, 3b9b:A, 3b9r:A, 3b9r:B, 3ba6:A, 4bew:A, 4bew:B, 2by4:A, 2c88:A, 2c8k:A, 2c8l:A, 2c9m:A, 2c9m:B, 2dqs:A, 2ear:A, 2eat:A, 2eau:A, 3fgo:A, 3fgo:B, 3fpb:A, 3fps:A, 4h1w:A, 6hef:A, 1iwo:A, 1iwo:B, 4j2t:A, 3j7t:A, 4kyt:A, 3n5k:A, 3n5k:B, 3n8g:A, 3nal:A, 3nam:A, 3nan:A, 4nab:A, 5ncq:A, 2o9j:A, 2oa0:A, 8owa:A, 8owl:A, 6rb2:A, 1su4:A, 1t5s:A, 1t5t:A, 3tlm:A, 4uu0:A, 4uu1:A, 1vfp:A, 1vfp:B, 3w5a:A, 3w5a:B, 3w5b:A, 1wpg:A, 1wpg:B, 1wpg:C, 1wpg:D, 5xa7:A, 5xa8:A, 5xa9:A, 5xaa:A, 4xou:A, 1xp5:A, 6yaa:A, 4ycl:A, 4ycm:A, 4ycn:A, 2yfy:A, 6yso:A, 6yso:B, 2zbd:A, 2zbe:A, 2zbe:B, 2zbf:A, 2zbg:A
14 1y9d:D 560 39 0.1392 0.0196 0.2821 5.9 1y9d:A, 1y9d:C
15 7vjv:A 221 30 0.1392 0.0498 0.3667 6.1
16 4fee:A 586 39 0.1392 0.0188 0.2821 6.3 2ez4:A, 2ez4:B, 2ez8:A, 2ez8:B, 2ez9:A, 2ez9:B, 2ezt:A, 2ezt:B, 2ezu:A, 2ezu:B, 4fee:B, 4feg:A, 4feg:B, 6haf:A, 6haf:B, 4kgd:A, 4kgd:B, 1pow:A, 1pow:B, 1pox:A, 1pox:B, 1y9d:B
17 7el3:A 138 35 0.1392 0.0797 0.3143 7.5 7el3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417