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BioLiP
>protein
GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDD

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2kuo:A 91 50 0.9091 0.5495 1.0000 7.31e-33 2kqb:A, 2kqc:A, 2kqd:A, 2kqe:A
2 3ff6:A 750 26 0.1818 0.0133 0.3846 1.8 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A
3 2hmc:A 314 39 0.2000 0.0350 0.2821 2.5
4 3or1:B 385 32 0.2182 0.0312 0.3750 2.6 3or1:E, 3or2:B, 3or2:E
5 8v9l:x 387 31 0.1818 0.0258 0.3226 2.8 7vok:A, 7vok:B, 7vok:C, 7vok:D
6 2x24:B 667 26 0.1818 0.0150 0.3846 2.9 2x24:A
7 7vmx:B 359 31 0.1818 0.0279 0.3226 2.9
8 7ynd:A 1567 35 0.2000 0.0070 0.3143 3.3
9 8wmi:A 1237 35 0.2000 0.0089 0.3143 6.5
10 8wmc:A 1249 35 0.2000 0.0088 0.3143 6.6
11 1f8r:A 483 23 0.1636 0.0186 0.3913 6.6 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
12 7y9y:A 1482 35 0.2000 0.0074 0.3143 6.6 8wml:A
13 7y9x:A 1458 35 0.2000 0.0075 0.3143 6.6 8gs2:A
14 7wah:A 1473 35 0.2000 0.0075 0.3143 6.8
15 8wm4:A 1331 35 0.2000 0.0083 0.3143 7.0
16 7paj:9 393 31 0.1818 0.0254 0.3226 7.4 7pak:9, 7pha:9, 7pi9:9, 7pip:9
17 3avt:A 1203 40 0.2364 0.0108 0.3250 8.0 7abz:6, 5afi:z, 3agp:A, 3agq:A, 3avu:A, 3avv:A, 3avw:A, 3avx:A, 3avy:A, 7bbn:A, 7bbn:B, 2bvn:A, 2bvn:B, 1efm:A, 1etu:A, 4fwt:A, 2hcj:A, 2hcj:B, 2hdn:A, 2hdn:B, 2hdn:C, 2hdn:D, 2hdn:E, 2hdn:F, 2hdn:G, 2hdn:H, 2hdn:I, 2hdn:J, 2hdn:K, 2hdn:L, 5i4r:C, 5i4r:D, 5i4r:G, 5i4r:H, 3mmp:G, 5opd:A, 5opd:B, 4pc2:A, 4pc2:B, 4pc3:A, 4pc3:B, 4pc6:A, 4pc6:B, 4pc7:A, 3u6b:B, 3u6b:A, 3vnu:A, 3vnv:A, 6wd4:8, 6wd7:8, 6wd9:8, 6wda:8
18 8eex:A 1284 21 0.1455 0.0062 0.3810 9.0
19 2v4j:B 380 17 0.1455 0.0211 0.4706 9.1 2v4j:E
20 5w75:C 387 31 0.1818 0.0258 0.3226 9.2 5w75:B, 5w75:D, 5w75:A
21 8d1v:A 1229 21 0.1455 0.0065 0.3810 9.8
22 4ud8:A 500 31 0.2182 0.0240 0.3871 9.9 4ud8:B
23 8eey:A 1544 21 0.1455 0.0052 0.3810 9.9 7yna:A, 7ynb:A, 7ync:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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