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BioLiP
>protein
GPLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLD

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3rnj:A 67 67 1.0000 1.0000 1.0000 8.20e-46
2 2kxc:A 67 61 0.5522 0.5522 0.6066 7.01e-25
3 6a9c:B 66 56 0.3433 0.3485 0.4107 4.88e-06
4 4iim:A 57 60 0.3284 0.3860 0.3667 1.94e-05 4iim:B
5 4iio:B 57 59 0.2985 0.3509 0.3390 7.33e-05
6 4f14:A 56 56 0.2687 0.3214 0.3214 7.50e-05
7 3pvl:A 597 57 0.3433 0.0385 0.4035 2.28e-04
8 7oj9:A 67 60 0.2985 0.2985 0.3333 2.71e-04
9 2o9v:A 67 48 0.2537 0.2537 0.3542 2.77e-04 4ln2:A
10 8hlo:A 67 66 0.3134 0.3134 0.3182 4.87e-04 2rqu:A
11 5f3y:A 549 62 0.2985 0.0364 0.3226 0.001
12 1w70:A 60 59 0.3134 0.3500 0.3559 0.014 1w70:B
13 2sem:B 59 54 0.2836 0.3220 0.3519 0.018 1sem:A, 1sem:B, 2sem:A, 3sem:A, 3sem:B
14 2jma:A 62 63 0.2388 0.2581 0.2540 0.049 5ihk:A, 3thk:A, 3thk:B, 1u06:A
15 2ak5:B 64 62 0.2836 0.2969 0.3065 0.098 2df6:A, 2df6:B
16 1gbr:A 74 63 0.2836 0.2568 0.3016 0.12
17 1uj0:A 58 55 0.2687 0.3103 0.3273 0.12
18 2rpn:A 59 49 0.2836 0.3220 0.3878 0.15
19 1zsg:A 65 60 0.2836 0.2923 0.3167 0.23 2p4r:A, 5sxp:B, 5sxp:D, 5sxp:A, 5sxp:C
20 6f55:A 67 57 0.2537 0.2537 0.2982 0.28
21 8dgq:A 272 50 0.2239 0.0551 0.3000 0.43 8dgq:B, 6pxc:A, 6way:A
22 1ssh:A 60 59 0.2687 0.3000 0.3051 0.54
23 6eri:AD 221 23 0.1343 0.0407 0.3913 0.71 5h1s:F, 5mlc:E, 5mmi:D, 5mmm:D, 5x8p:D, 5x8t:D
24 4a6v:A 264 49 0.2090 0.0530 0.2857 1.0 4a6v:B, 4a6w:A, 2bb7:A, 1c21:A, 1c22:A, 1c23:A, 1c24:A, 1c27:A, 3d27:A, 2evc:A, 2evm:A, 2evo:A, 2evo:B, 2gg0:A, 2gg2:A, 2gg3:A, 2gg5:A, 2gg7:A, 2gg8:A, 2gg9:A, 2ggb:A, 2ggc:A, 2gtx:A, 2gtx:B, 2gu4:A, 2gu4:B, 2gu5:A, 2gu5:B, 2gu6:A, 2gu6:B, 2gu7:A, 2gu7:B, 1mat:A, 2mat:A, 3mat:A, 2p98:A, 2p99:A, 2p9a:A, 4pnc:A, 2q92:A, 2q93:A, 2q94:A, 2q95:A, 2q96:A, 1xnz:A, 1yvm:A, 4z7m:A, 4z7m:B
25 5jhq:D 463 36 0.1642 0.0238 0.3056 1.5 6cf6:B, 6cf6:A, 5hkp:A, 5hkp:B, 5jhq:A, 5jhq:B, 5jhq:C, 6urq:B, 6urq:A
26 4v4n:AS 150 62 0.2537 0.1133 0.2742 1.7 4v6u:BS
27 1b07:A 59 54 0.2388 0.2712 0.2963 1.8 6atv:A, 1cka:A, 1ckb:A, 5ih2:A, 5ih2:B, 5l23:A, 5ul6:A
28 8dgo:B 218 38 0.1940 0.0596 0.3421 2.3 2aoa:A, 2aoa:B, 2aob:A, 2aob:B, 2aob:C, 2aob:D, 1aze:A, 1bm2:A, 1bmb:A, 3c7i:A, 5cdw:B, 5cdw:K, 5cdw:O, 5cdw:Y, 5cdw:d, 5cdw:Z, 5cdw:V, 5cdw:P, 5cdw:L, 5cdw:H, 5cdw:C, 5cdw:E, 5cdw:U, 5cdw:c, 5cdw:A, 5cdw:G, 1cj1:A, 1cj1:B, 1cj1:C, 1cj1:D, 1cj1:E, 1cj1:F, 1cj1:G, 1cj1:H, 1cj1:I, 1cj1:J, 1cj1:K, 1cj1:L, 1fyr:A, 1fyr:B, 1fyr:C, 1fyr:D, 1gbq:A, 2gbq:A, 3gbq:A, 4gbq:A, 2h5k:A, 2huw:A, 2huw:B, 3imd:A, 3imd:B, 3imj:A, 3imj:B, 3in7:A, 3in7:C, 3in8:A, 1io6:A, 1jyq:A, 1jyq:B, 1jyr:A, 3kfj:A, 7mph:A, 7mph:B, 7mph:C, 7mph:D, 7mph:E, 7mph:F, 3mxc:A, 3mxy:A, 3n7y:A, 3n7y:B, 3n7y:C, 3n84:A, 3n84:B, 3n84:C, 3n84:D, 3n84:E, 3n84:F, 3n8m:A, 3ov1:A, 3ove:A, 4p9v:A, 4p9z:A, 1qg1:E, 3s8l:A, 3s8n:A, 3s8o:A, 1tze:E, 2vwf:A, 2w0z:A, 3wa4:A, 6wm1:A, 6wm1:C, 6wo2:A, 6wo2:B, 1x0n:A, 1zfp:E
29 1hqm:D 1175 24 0.1642 0.0094 0.4583 2.9 1i6v:D
30 4y0v:A 165 34 0.1791 0.0727 0.3529 3.0 4y0v:B, 4ylg:A, 4ylg:B
31 4z88:D 70 24 0.1493 0.1429 0.4167 5.4 4z88:A, 4z88:B, 4z88:C, 4z88:E, 4z88:F, 4z88:G, 4z88:H, 4z88:I, 4z88:J, 4z88:K, 4z88:L, 4z89:A, 4z89:C, 4z89:B, 4z89:D, 4z89:J, 4z89:I, 4z89:E, 4z89:F, 4z89:G, 4z89:H
32 6v7g:A 357 42 0.1940 0.0364 0.3095 5.5 1dgr:X, 1dgr:V, 1dgr:N, 1dgw:X, 6v7j:A, 6v7j:B, 6v7j:C, 6v7l:A, 6v7l:B, 6v7l:C
33 7zgm:A 702 26 0.1493 0.0142 0.3846 5.9
34 4fo8:C 266 33 0.1642 0.0414 0.3333 6.6 4fo7:A, 4fo7:B, 4fo7:C, 4fo7:D, 4fo8:A, 4fo8:B, 4fo8:D, 4juq:A, 4juq:B, 4juq:C, 4juq:D
35 7r5e:B 157 34 0.1791 0.0764 0.3529 8.2 7r4v:B, 7r4v:A, 7r4z:A, 7r4z:B, 7r5e:A, 7r5g:A, 7r5g:B, 7r5p:A, 7r5p:B, 7r5p:C, 7r5p:D, 7r5p:E, 7r5p:F
36 8d4c:C 180 36 0.1642 0.0611 0.3056 8.3 8d4c:H, 8d4c:D, 8d4c:F, 8d4d:C, 8d4d:H, 8d4d:D, 8d4d:F, 8d4e:C, 8d4e:H, 8d4e:Z, 8d4f:C, 8d4f:H, 8d4f:Z, 8d4f:D, 8d4f:F, 8d4f:Q, 8d4g:C, 8d4g:H, 8d4g:Z, 8d4g:D, 8d4g:F, 8d4g:Q, 8d9r:C, 8d9r:H, 8d9r:Z, 8d9r:J, 8d9r:X, 8d9r:3, 8d9r:K, 8d9r:a, 8d9r:4, 8d9r:O, 8d9r:b, 8d9r:5, 8d9r:P, 8d9r:c, 8d9r:6, 8d9r:Q, 8d9r:d, 8d9r:7, 8d9s:C, 8d9s:H, 8d9s:Z, 8d9s:J, 8d9s:X, 8d9s:3, 8d9s:K, 8d9s:a, 8d9s:4, 8d9s:O, 8d9s:b, 8d9s:5, 8d9s:P, 8d9s:c, 8d9s:6, 8d9s:Q, 8d9s:d, 8d9s:7, 8d9t:C, 8d9t:H, 8d9t:J, 8d9t:X, 8d9t:K, 8d9t:Z, 8d9t:O, 8d9t:a, 8d9t:P, 8d9t:b, 8d9t:Q, 8d9t:c, 8d9u:C, 8d9u:H, 8d9u:J, 8d9u:X, 8d9u:K, 8d9u:Z, 8d9u:O, 8d9u:a, 8d9u:P, 8d9u:b, 8d9u:Q, 8d9u:c, 8d9v:C, 8d9v:H, 8d9v:D, 8d9v:F, 8d9w:F, 8d9w:I, 1hur:A, 1hur:B, 7ux3:C, 7ux3:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417