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BioLiP
>protein
GPLGSGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDG

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g99:B 41 41 1.0000 1.0000 1.0000 1.78e-25
2 1n0z:A 45 31 0.3415 0.3111 0.4516 6.94e-05
3 2k1p:A 33 29 0.3659 0.4545 0.5172 0.001
4 8f5o:B 1134 22 0.2195 0.0079 0.4091 0.090 8f5p:B
5 7v3u:6 646 11 0.1951 0.0124 0.7273 0.34 7qhs:6, 7v3u:F, 7v3v:6, 7v3v:F, 7w8g:6, 7w8g:F, 7z13:6, 7z13:e
6 5u8t:6 661 11 0.1951 0.0121 0.7273 0.34 6wgi:6
7 5v8f:6 692 11 0.1951 0.0116 0.7273 0.34 8b9a:6, 8b9b:6, 8b9c:6, 6eyc:6, 3ja8:6, 8kg6:6, 8kg8:6, 8kg9:6, 7p30:6, 7p30:E, 7p5z:6, 7p5z:E, 8p5e:6, 8p62:6, 8p63:6, 7pmk:6, 7pmn:6, 6ptn:m, 6ptn:6, 6pto:l, 6pto:6, 7pt6:6, 7pt6:F, 7pt7:6, 7pt7:F, 6rqc:6, 6skl:6, 6sko:6, 6u0m:6, 5u8s:6, 8w7m:6, 8xgc:6
8 4u65:E 181 14 0.2195 0.0497 0.6429 0.37 4u65:F
9 7dg2:A 231 14 0.2195 0.0390 0.6429 1.2
10 8b1t:B 1141 28 0.2439 0.0088 0.3571 3.6 8b1u:B, 7mr3:B, 6sjb:B, 6sje:B, 6sjf:B, 6sjg:B, 6t2u:B, 6t2v:B
11 8b1r:B 1170 28 0.2439 0.0085 0.3571 3.6 3k70:B, 3k70:E, 5ld2:B, 7mr4:B, 1w36:B, 1w36:E
12 7arc:D 395 26 0.2195 0.0228 0.3462 3.9 7ard:D
13 3uel:A 521 14 0.1707 0.0134 0.5000 4.5 5a7r:A, 4b1h:A, 4b1i:A, 4b1j:A, 6hh6:A, 6hmk:A, 6hml:A, 6hmm:A, 6hmn:A, 7kfp:A, 7kg0:A, 7kg1:A, 7kg6:A, 7kg7:A, 7kg8:A, 5lhb:A, 4n9y:A, 4n9z:A, 4n9z:B, 4na0:A, 4na0:B, 4na0:C, 4na4:A, 4na4:B, 4na4:C, 6o9x:A, 6o9y:A, 6oa0:A, 6oa1:A, 6oa3:A, 6oak:A, 6oal:A, 3uel:B, 3uel:C
14 3it3:A 337 25 0.2439 0.0297 0.4000 6.0 4e3w:A, 4e3w:B, 3it0:A, 3it0:B, 3it3:B
15 2jyd:A 46 43 0.2927 0.2609 0.2791 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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