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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDKGSYWTLDPDSYN
MFENGSFLRRRRRF

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ako:C 97 97 0.9787 0.9485 0.9485 4.75e-64 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
2 8vfy:O 102 97 0.7234 0.6667 0.7010 4.33e-46 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
3 2hdc:A 97 96 0.7128 0.6907 0.6979 1.67e-45
4 7vov:A 93 92 0.6383 0.6452 0.6522 1.49e-42 7vou:C, 7vov:B
5 7cby:C 100 96 0.6809 0.6400 0.6667 9.61e-42
6 7yze:A 87 80 0.5851 0.6322 0.6875 2.44e-36 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
7 2c6y:A 98 96 0.5532 0.5306 0.5417 2.62e-31 2c6y:B
8 8bzm:E 95 94 0.5000 0.4947 0.5000 4.46e-29 8bzm:I, 8bzm:A, 8bzm:J
9 7yza:A 122 80 0.4574 0.3525 0.5375 8.31e-27 7yz7:A, 7yzc:A, 7yzd:A
10 7yzb:A 125 98 0.4468 0.3360 0.4286 1.62e-24
11 6ncm:A 91 75 0.4043 0.4176 0.5067 1.72e-24 6nce:A, 6ncm:B
12 3qrf:G 82 73 0.3936 0.4512 0.5068 4.93e-24 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
13 7yzg:A 121 79 0.3936 0.3058 0.4684 8.59e-23
14 2a07:J 83 77 0.3511 0.3976 0.4286 9.10e-23 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
15 7tdw:A 90 73 0.3723 0.3889 0.4795 1.06e-22 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
16 6el8:A 89 76 0.3830 0.4045 0.4737 1.31e-21 6el8:D
17 3g73:B 95 79 0.3936 0.3895 0.4684 1.57e-20 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
18 3co6:C 91 79 0.3404 0.3516 0.4051 5.29e-17 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
19 3l2c:A 85 77 0.3511 0.3882 0.4286 7.57e-17
20 2uzk:A 97 93 0.3830 0.3711 0.3871 1.42e-16 2uzk:C
21 6ftf:B 291 33 0.1383 0.0447 0.3939 0.66 6hyi:B, 6hyq:A, 6hyq:B, 6hyq:C, 6hyq:D
22 6flo:A 277 33 0.1383 0.0469 0.3939 1.8 6flo:B, 6h4g:A, 6h4g:B
23 4x6r:B 290 23 0.1064 0.0345 0.4348 4.9 3fhi:B, 4jv4:A, 5kjx:A, 5kjy:A, 5kjz:A, 7lz4:A, 7lz4:B, 7lz4:C, 7lz4:D, 7lz4:E, 7lz4:F, 7lz4:G, 7lz4:H, 4mx3:A, 4mx3:B, 1ne4:A, 1ne6:A, 3plq:A, 3pna:A, 3pna:B, 1rgs:A, 1rl3:A, 1rl3:B
24 2yhe:A 639 81 0.2447 0.0360 0.2840 7.3 4av7:A, 4av7:B, 4av7:C, 4av7:D, 4av7:E, 4av7:F, 4axh:A, 4axh:B, 2yhe:B, 2yhe:C, 2yhe:D, 2yhe:E, 2yhe:F
25 3cfz:A 289 42 0.1383 0.0450 0.3095 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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